RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	CD27	P26842	260 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	CCKAR	P32238	428 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	SNCA	P37840	140 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	FASLG	P48023	281 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	SLC37A1	P57057	533 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	PKIA	P61925	76 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	MZT1	Q08AG7	82 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	FOXO1	Q12778	655 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	SHH	Q15465	462 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	EXT1	Q16394	746 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	KHDC3L	Q587J8	217 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	ARSJ	Q5FYB0	599 aa	Predicted RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM196	Q5HYL7	178 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	LIAT1	Q6ZQX7	453 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	MRPL21	Q7Z2W9	205 aa	Known RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	TIPARP	Q7Z3E1	657 aa	Known RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	ZAR1	Q86SH2	424 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF761	Q86XN6	746 aa	Predicted RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	C7orf61	Q8IZ16	206 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	OR2C3	Q8N628	320 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	IL22RA1	Q8N6P7	574 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	NPRL2	Q8WTW4	380 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	ZNF799	Q96GE5	643 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	GAS2L1	Q99501	681 aa	Predicted RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	PECR	Q9BY49	303 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	LMAN1L	Q9HAT1	526 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	WSB2	Q9NYS7	404 aa	Predicted RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	MIOX	Q9UGB7	285 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	ANXA10	Q9UJ72	324 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	LAMP3	Q9UQV4	416 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	KLHDC2	Q9Y2U9	406 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	MRPS18B	Q9Y676	258 aa	Known RBP	3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	WSB1	Q9Y6I7	421 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	DOCK6	Q96HP0	2047 aa		3.14	□□□□□ -1.91
VMP1-216	ENST00000592790	NBPF19	A0A087WUL8	3843 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	CCDC187	A0A096LP49	1063 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A0U1RQV5	110 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	LOC105378220	A0A1B0GUY1	285 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	OR6C6	A6NF89	314 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	ANKRD30BL	A7E2S9	258 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM14DP	A8MWL7	114 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790		H7BYZ3	331 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	GPANK1	O95872	356 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	IGKV1D-16	P01601	117 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	SLC2A1	P11166	492 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	ICAM2	P13598	275 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	RPS27	P42677	84 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	OR2B8P	P59922	312 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	RNF4	P78317	190 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	DCD	P81605	110 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	HNF4G	Q14541	408 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	RAB35	Q15286	201 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM176B	Q3YBM2	270 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM255A	Q5JRV8	349 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	DNLZ	Q5SXM8	178 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	FBXO46	Q6PJ61	603 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	MOB1B	Q7L9L4	216 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	SLC35E3	Q7Z769	313 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	MRPL41	Q8IXM3	137 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	OSR2	Q8N2R0	312 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	LRRC18	Q8N456	261 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	LRRC75A	Q8NAA5	344 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	OR4D6	Q8NGJ1	314 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	RHBDD1	Q8TEB9	315 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	KCNE4	Q8WWG9	221 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	PSMF1	Q92530	271 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	TMEM68	Q96MH6	324 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	NOL4L	Q96MY1	436 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	CIB3	Q96Q77	187 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	CABLES2	Q9BTV7	478 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	TLNRD1	Q9H1K6	362 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	ENY2	Q9NPA8	101 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	LIN7C	Q9NUP9	197 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	RCL1	Q9Y2P8	373 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	MRPS2	Q9Y399	296 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	FAM96B	Q9Y3D0	163 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	BSN	Q9UPA5	3926 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	IGKV1D-42	A0A075B6H8	117 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A1B0GTH9	108 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790		A0A1W2PNV4	684 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	SDCBP	O00560	298 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	CYB5B	O43169	146 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	DNPH1	O43598	174 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	PITX3	O75364	302 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	OR7C1	O76099	320 aa	Predicted RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	HSPB1	P04792	205 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	NME1	P15531	152 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	CBR1	P16152	277 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	FUT3	P21217	361 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	PMEL	P40967	661 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	HTR5A	P47898	357 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	RPS18	P62269	152 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	HLA-DRB3	P79483	266 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	ENDOG	Q14249	297 aa	Known RBP	3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	CD226	Q15762	336 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	IQCJ	Q1A5X6	159 aa		3.13	□□□□□ -1.91
VMP1-216	ENST00000592790	LY6G6F	Q5SQ64	297 aa		3.13	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms