RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ATF1P18846 271 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 MPZP25189 248 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 HAAOP46952 286 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 NPBWR2P48146 333 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 SOX2P48431 317 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 GBX2P52951 348 aaPredicted RBP7.65□□□□□ -1.18
VPS35-206ENST00000565228 DLX1P56177 255 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ZP1P60852 638 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 SLC3A1Q07837 685 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 DGUOKQ16854 277 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TMEM244Q5VVB8 128 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 RNLSQ5VYX0 342 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 FAM166AQ6J272 317 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 C1QL2Q7Z5L3 287 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 KLHL36Q8N4N3 616 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 CD177Q8N6Q3 437 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ZNF676Q8N7Q3 588 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 OR11L1Q8NGX0 322 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 OR10Z1Q8NGY1 313 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ANGPTL6Q8NI99 470 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 GHSRQ92847 366 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 RFT1Q96AA3 541 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TIMD4Q96H15 378 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 NRIP2Q9BQI9 281 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 CDCA4Q9BXL8 241 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ELL3Q9HB65 397 aaPredicted RBP7.65□□□□□ -1.18
VPS35-206ENST00000565228 HES4Q9HCC6 221 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 C14orf119Q9NWQ9 140 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TAS2R4Q9NYW5 299 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 ZNF581Q9P0T4 197 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 HHLA2Q9UM44 414 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 MAB21L2Q9Y586 359 aa7.65□□□□□ -1.18
VPS35-206ENST00000565228 TRAV8-7A0A075B6U6 113 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 LOC105371242A0A075B767 164 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 A0A1W2PPK0 400 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 OR5B21A6NL26 309 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 TMEM212A6NML5 194 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 J3QT63 122 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 SPRY1O43609 319 aaPredicted RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 CCDC159P0C7I6 412 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 PSG2P11465 335 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 RPS2P15880 293 aaKnown RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 ZNF12P17014 697 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 IGFBP3P17936 291 aaPredicted RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 AZGP1P25311 298 aaKnown RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 PRB3Q04118 309 aaPredicted RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 KLF17Q5JT82 389 aaPredicted RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 FAM27D1Q5T7N8 215 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 WDR25Q64LD2 544 aaPredicted RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 RPL22L1Q6P5R6 122 aaKnown RBP7.64□□□□□ -1.19
VPS35-206ENST00000565228 ACP7Q6ZNF0 438 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 ZNF788Q6ZQV5 615 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 DCDC5Q6ZRR9 648 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 UTS2BQ765I0 119 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 LYPD6Q86Y78 171 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 EGFL6Q8IUX8 553 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 STX19Q8N4C7 294 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 SPICQ8N5J4 248 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 PARP16Q8N5Y8 322 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 POC1AQ8NBT0 407 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 OR13C3Q8NGS6 347 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 OR13C9Q8NGT0 318 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 OR5AK2Q8NH90 309 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 SMIM19Q96E16 107 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 VCXQ9H320 206 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 TMEM160Q9NX00 188 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 RAB26Q9ULW5 256 aa7.64□□□□□ -1.19
VPS35-206ENST00000565228 TRBV5-7A0A0A0MS05 114 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 IFNL4K9M1U5 179 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 ADAM20O43506 726 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 ANGPTL7O43827 346 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 NOS1APO75052 506 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 PLATP00750 562 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 MYL12AP19105 171 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 BCL3P20749 454 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 PITPNBP48739 271 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 WNT4P56705 351 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 PAX8Q06710 450 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 IL24Q13007 206 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 TUSC1Q2TAM9 212 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 CCDC58Q4VC31 144 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 ATPAF1Q5TC12 328 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 METAP1DQ6UB28 335 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 UNQ9370/PRO34162Q6UXP9 181 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 PEG10Q86TG7 708 aaKnown RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 MUC20Q8N307 709 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 ZNRF1Q8ND25 227 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 OR52N4Q8NGI2 321 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 OR5D18Q8NGL1 313 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 OR51F2Q8NH61 342 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 SLAMF9Q96A28 289 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 NEIL1Q96FI4 390 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 OPALINQ96PE5 141 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 ZNF184Q99676 751 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 SSBP3Q9BWW4 388 aaPredicted RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 ZCCHC4Q9H5U6 513 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 RBFOX1Q9NWB1 397 aaKnown RBP7.63□□□□□ -1.19
VPS35-206ENST00000565228 NLKQ9UBE8 527 aa7.63□□□□□ -1.19
VPS35-206ENST00000565228 KAAG1Q9UBP8 84 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms