RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 BCL2L15Q5TBC7 163 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 ACP7Q6ZNF0 438 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 SSX6Q7RTT6 188 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 CD177Q8N6Q3 437 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 DNAJC9Q8WXX5 260 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 LRTOMTQ8WZ04 291 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 RORBQ92753 470 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 IL4I1Q96RQ9 567 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 TBX5Q99593 518 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 METTL8Q9H825 291 aaKnown RBP15.49■□□□□ 0.07
VPS35-202ENST00000561713 KRT84Q9NSB2 600 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 ENPP5Q9UJA9 477 aa15.49■□□□□ 0.07
VPS35-202ENST00000561713 CAB39Q9Y376 341 aaPredicted RBP15.49■□□□□ 0.07
VPS35-202ENST00000561713 DNAH3Q8TD57 4116 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 MEX3AA1L020 520 aaKnown RBP15.48■□□□□ 0.07
VPS35-202ENST00000561713 RFPL4AA6NLU0 287 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 RFPL4AL1F8VTS6 287 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 H0YAE9 185 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 M0R1W7 72 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 TSPAN9O75954 239 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 HOXB6P17509 224 aaKnown RBP15.48■□□□□ 0.07
VPS35-202ENST00000561713 HAAOP46952 286 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 LY6EQ16553 131 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 ODF4Q2M2E3 257 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 ZNF684Q5T5D7 378 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 DEGS2Q6QHC5 323 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 MEPCEQ7L2J0 689 aaKnown RBP15.48■□□□□ 0.07
VPS35-202ENST00000561713 POC1AQ8NBT0 407 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 OR5K1Q8NHB7 308 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 NPRL2Q8WTW4 380 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 ASB17Q8WXJ9 295 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 PPA2Q9H2U2 334 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 MRM2Q9UI43 246 aaKnown RBP15.48■□□□□ 0.07
VPS35-202ENST00000561713 TMEM14AQ9Y6G1 99 aa15.48■□□□□ 0.07
VPS35-202ENST00000561713 ACOD1A6NK06 481 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 H3BUX3 64 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 ZNF254O75437 659 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 MTRF1O75570 445 aaKnown RBP15.47■□□□□ 0.07
VPS35-202ENST00000561713 RPP14O95059 124 aaKnown RBP15.47■□□□□ 0.07
VPS35-202ENST00000561713 ALX3O95076 343 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 NRASP01111 189 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 COX7A1P24310 79 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 ERVFRD-1P60508 538 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 SMIM21Q3B7S5 101 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 AADACL4Q5VUY2 407 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 SLX4IPQ5VYV7 408 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 NCR3LG1Q68D85 454 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 Q6ZPA2 131 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 ASRGL1Q7L266 308 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 KRT74Q7RTS7 529 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 MKXQ8IYA7 352 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 OR4M1Q8NGD0 313 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 OR5A2Q8NGI9 324 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 OR51G2Q8NGK0 314 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 TRMT10AQ8TBZ6 339 aaKnown RBP15.47■□□□□ 0.07
VPS35-202ENST00000561713 NRBF2Q96F24 287 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 SDSLQ96GA7 329 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 OR14J1Q9UGF5 321 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 SLC22A13Q9Y226 551 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 SIGLEC9Q9Y336 463 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 R4GMQ9 66 aa15.47■□□□□ 0.07
VPS35-202ENST00000561713 TRBV23-1A0A0A0MS06 115 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 A0A1B0GTI1 187 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 ZAR1LA6NP61 321 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 J3QT63 122 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 PGA5P0DJD9 388 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 PIPP12273 146 aaPredicted RBP15.46■□□□□ 0.07
VPS35-202ENST00000561713 ATP6V1B1P15313 513 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 CCL3L1P16619 93 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 BMXP51813 675 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 UBE2E1P51965 193 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 BLMHQ13867 455 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 ZNF273Q14593 569 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 ATP6AP1Q15904 470 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 C12orf73Q69YU5 71 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 SLC35E4Q6ICL7 350 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 AMIGO2Q86SJ2 522 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 ZNF671Q8TAW3 534 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 TMEM163Q8TC26 289 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 PRRG3Q9BZD7 231 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 MOB1AQ9H8S9 216 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 OR52A1Q9UKL2 312 aa15.46■□□□□ 0.07
VPS35-202ENST00000561713 PQLC2LA1A4F0 135 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 ZNF670-ZNF695F2Z2N8 137 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 NXPH2O95156 264 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 TGFBR2P37173 567 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 CLVS2Q5SYC1 327 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 KPRPQ5T749 579 aaPredicted RBP15.45■□□□□ 0.06
VPS35-202ENST00000561713 ZBTB37Q5TC79 503 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 NXNL2Q5VZ03 156 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 ZNF782Q6ZMW2 699 aaPredicted RBP15.45■□□□□ 0.06
VPS35-202ENST00000561713 ELMOD2Q8IZ81 293 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 OR14K1Q8NGZ2 314 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 AJUBAQ96IF1 538 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 DMRTB1Q96MA1 342 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 CLN6Q9NWW5 311 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 V9GYS6 101 aa15.45■□□□□ 0.06
VPS35-202ENST00000561713 ANKRD61A6NGH8 418 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 INMTO95050 263 aa15.44■□□□□ 0.06
VPS35-202ENST00000561713 OPN1MWP04001 364 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms