RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, human

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-222	ENST00000561431	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TECR	Q9NZ01	308 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	IL36G	Q9NZH8	169 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PURG	Q9UJV8	347 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	FBXL4	Q9UKA2	621 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	FZR1	Q9UM11	496 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	ARL2BP	Q9Y2Y0	163 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	NDUFAF1	Q9Y375	327 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	PYGO1	Q9Y3Y4	419 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CABIN1	Q9Y6J0	2220 aa		3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	TDRD6	O60522	2096 aa	Known RBP	3.37	□□□□□ -1.87
LRRC28-222	ENST00000561431	CACNA1B	Q00975	2339 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	GCN1	Q92616	2671 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	KIR2DL5B	A0A0G2JN68	375 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	KIR2DL5B	A0A0G2JPC4	375 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	OR51F1	A6NGY5	319 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	USP27X	A6NNY8	438 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FTCDNL1	E5RQL4	147 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SULT1C2	O00338	296 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SURF4	O15260	269 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	HPGDS	O60760	199 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	MED6	O75586	246 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	POP7	O75817	140 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	TNFSF15	O95150	251 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	MPZL1	O95297	269 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	HLA-A	P01891	365 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ZSCAN5DP	P0CG00	497 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SCGB1A1	P11684	91 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ANXA3	P12429	323 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ICAM2	P13598	275 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	PRKACG	P22612	351 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	GNRHR	P30968	328 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FOXN2	P32314	431 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	RPL22	P35268	128 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SSTR5	P35346	364 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	OPRL1	P41146	370 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	RBM34	P42696	430 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLCO1A2	P46721	670 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	CSNK1A1	P48729	337 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SRP9	P49458	86 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	DAP3	P51398	398 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	UGT2B15	P54855	530 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FGF8	P55075	233 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	GFER	P55789	205 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	UBE2K	P61086	200 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	PPP1CA	P62136	330 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FAM3A	P98173	230 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	CDKL1	Q00532	357 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	OC90	Q02509	493 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ACVR1	Q04771	509 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	MLLT11	Q13015	90 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	PRPSAP1	Q14558	356 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ATXN7L3	Q14CW9	347 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	MAD2L1BP	Q15013	274 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	TGIF1	Q15583	401 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	HAGH	Q16775	308 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	NDUFA9	Q16795	377 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	DGUOK	Q16854	277 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ATP6V1F	Q16864	119 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	PGGHG	Q32M88	737 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	RFX4	Q33E94	735 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	LRRC37A5P	Q49AS3	106 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FAM45BP	Q6NSW5	357 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	NIPAL1	Q6NVV3	410 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLC27A4	Q6P1M0	643 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FAM199X	Q6PEV8	388 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	DHRS4L2	Q6PKH6	230 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SPESP1	Q6UW49	350 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ENPP6	Q6UWR7	440 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	DRAM2	Q6UX65	266 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	C19orf35	Q6ZS72	473 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	COX8C	Q7Z4L0	72 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	KIR2DL5A	Q8N109	375 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	PRELID2	Q8N945	189 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	KIR2DL5B	Q8NHK3	375 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SYNPR	Q8TBG9	265 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	RNASEH2C	Q8TDP1	164 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	UBE2E3	Q969T4	207 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	TMEM159	Q96B96	161 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	CREB3L1	Q96BA8	519 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	APH1A	Q96BI3	265 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	TLCD1	Q96CP7	247 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	TIMD4	Q96H15	378 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ITCH	Q96J02	903 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SERPINB12	Q96P63	405 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	KCNA7	Q96RP8	456 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	TSC22D3	Q99576	134 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	HOPX	Q9BPY8	73 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SEC22C	Q9BRL7	303 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLC35A5	Q9BS91	424 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	ZNF717	Q9BY31	904 aa	Predicted RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	YTHDF1	Q9BYJ9	559 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	FAM96A	Q9H5X1	160 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	PATZ1	Q9HBE1	687 aa	Known RBP	3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLC17A5	Q9NRA2	495 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	GIN1	Q9NXP7	522 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	VAPA	Q9P0L0	249 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	GHRL	Q9UBU3	117 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	SLC2A6	Q9UGQ3	507 aa		3.36	□□□□□ -1.87
LRRC28-222	ENST00000561431	KLHL21	Q9UJP4	597 aa		3.36	□□□□□ -1.87

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms