RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ANXA8P13928 327 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 RIPPLY1Q0D2K3 151 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 SNAPC1Q16533 368 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 C2orf68Q2NKX9 166 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 TMEM200BQ69YZ2 307 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 KCTD18Q6PI47 426 aaPredicted RBP9.46□□□□□ -0.9
USP3-220ENST00000561381 BCDIN3DQ7Z5W3 292 aaKnown RBP9.46□□□□□ -0.9
USP3-220ENST00000561381 AQP12AQ8IXF9 295 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 C11orf42Q8N5U0 333 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 C11orf44Q8N8P7 122 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 POC1AQ8NBT0 407 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 CCDC197Q8NCU1 140 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 OR4M1Q8NGD0 313 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 OR51G2Q8NGK0 314 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 OR5D13Q8NGL4 314 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 OR8B4Q96RC9 309 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 MROQ9BYG7 248 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 FBLN5Q9UBX5 448 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 FOXJ3Q9UPW0 622 aa9.46□□□□□ -0.9
USP3-220ENST00000561381 TRBV23-1A0A0A0MS06 115 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 A0A0G2JK05 382 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 A6NIN4 97 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 ACOD1A6NK06 481 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 OR5B21A6NL26 309 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 GSC2O15499 205 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 CHST1O43916 411 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 PRKYO43930 277 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 FKBP6O75344 327 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 SRSF10O75494 262 aaKnown RBP9.45□□□□□ -0.9
USP3-220ENST00000561381 NRASP01111 189 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 TTRP02766 147 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 CSF1P09603 554 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 CCL3L1P16619 93 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 COX7A1P24310 79 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 HAAOP46952 286 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 BMXP51813 675 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 EFNB2P52799 333 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 RPL31P62899 125 aaKnown RBP9.45□□□□□ -0.9
USP3-220ENST00000561381 CBX1P83916 185 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 ROM1Q03395 351 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 ZNF273Q14593 569 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 CRIP3Q6Q6R5 217 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 DEGS2Q6QHC5 323 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 PLEKHG7Q6ZR37 379 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 SPATA24Q86W54 205 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 ZNF679Q8IYX0 411 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 APOL4Q9BPW4 351 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 MEGF9Q9H1U4 602 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 C1orf21Q9H246 121 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 GPR173Q9NS66 373 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 NUFIP1Q9UHK0 495 aaKnown RBP9.45□□□□□ -0.9
USP3-220ENST00000561381 ENPP5Q9UJA9 477 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 IKZF2Q9UKS7 526 aa9.45□□□□□ -0.9
USP3-220ENST00000561381 DHRS3O75911 302 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 FAM107AO95990 144 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 PGA5P0DJD9 388 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 ATP6V1B1P15313 513 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 PRDX2P32119 198 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 RIDAP52758 137 aaKnown RBP9.44□□□□□ -0.9
USP3-220ENST00000561381 CRISP1P54107 249 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 HERPUD1Q15011 391 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 LRRC75BQ2VPJ9 315 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 SMIM21Q3B7S5 101 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 ZNF829Q3KNS6 432 aaPredicted RBP9.44□□□□□ -0.9
USP3-220ENST00000561381 ZNF684Q5T5D7 378 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 ZNF782Q6ZMW2 699 aaPredicted RBP9.44□□□□□ -0.9
USP3-220ENST00000561381 LHFPL4Q7Z7J7 247 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 ZNF561Q8N587 486 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 OR5K1Q8NHB7 308 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 PIFOQ8TCI5 191 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 ASB17Q8WXJ9 295 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 TEX12Q9BXU0 123 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 PAPOLBQ9NRJ5 636 aaKnown RBP9.44□□□□□ -0.9
USP3-220ENST00000561381 RASL12Q9NYN1 266 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 DNAJB9Q9UBS3 223 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 GTF2A1LQ9UNN4 478 aa9.44□□□□□ -0.9
USP3-220ENST00000561381 A0A1B0GTI1 187 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 TCRBV3S1A0A5B6 114 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 PQLC2LA1A4F0 135 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 MEX3AA1L020 520 aaKnown RBP9.43□□□□□ -0.9
USP3-220ENST00000561381 LOC110117498-PIK3R3F6TDL0 507 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 G3V4G9 280 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 J3QT63 122 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 MITFO75030 526 aaPredicted RBP9.43□□□□□ -0.9
USP3-220ENST00000561381 ZNF254O75437 659 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 PIPP12273 146 aaPredicted RBP9.43□□□□□ -0.9
USP3-220ENST00000561381 EPHA2P29317 976 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 KIR2DS4P43632 304 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 DAPP51397 102 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 CXCR4P61073 352 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 ESRRGP62508 458 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 FLOT2Q14254 428 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 PTGES3Q15185 160 aaKnown RBP9.43□□□□□ -0.9
USP3-220ENST00000561381 PLA1AQ53H76 456 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 CLVS2Q5SYC1 327 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 ZBTB37Q5TC79 503 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 LCN1P1Q5VSP4 162 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 TMEM42Q69YG0 159 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 FAHD1Q6P587 224 aa9.43□□□□□ -0.9
USP3-220ENST00000561381 ZNF322Q6U7Q0 402 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms