RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 NKX2-8O15522 239 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 KNG1P01042 644 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 SFTPBP07988 381 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 UBBP0CG47 229 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 ZNF708P17019 499 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 IGFBP7Q16270 282 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 PDSS1Q5T2R2 415 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 SIGIRRQ6IA17 410 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 JMJD6Q6NYC1 403 aaPredicted RBP9.21□□□□□ -0.93
CUX1-217ENST00000558836 OR5M8Q8NGP6 311 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 OR13G1Q8NGZ3 307 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 CDC6Q99741 560 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 ZNF107Q9UII5 783 aaPredicted RBP9.21□□□□□ -0.93
CUX1-217ENST00000558836 ZNF850A8MQ14 1090 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 SYNGR4O95473 234 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 NGFP01138 241 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 ARG2P78540 354 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 CLVS2Q5SYC1 327 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 RIPPLY2Q5TAB7 128 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 PLCXD3Q63HM9 321 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 HOGA1Q86XE5 327 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 CALHM1Q8IU99 346 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 MRPS18CQ9Y3D5 142 aaKnown RBP9.21□□□□□ -0.94
CUX1-217ENST00000558836 PIEZO2Q9H5I5 2752 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 C5orf51A6NDU8 294 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 FOXI3A8MTJ6 420 aaPredicted RBP9.21□□□□□ -0.94
CUX1-217ENST00000558836 MSTNO14793 375 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 ADAP1O75689 374 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 CPT2P23786 658 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 RBP2P50120 134 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 GMFBP60983 142 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 DHODHQ02127 395 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 EIF3IQ13347 325 aaKnown RBP9.21□□□□□ -0.94
CUX1-217ENST00000558836 RFPL4BQ6ZWI9 263 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 C5orf24Q7Z6I8 188 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 PHB2Q99623 299 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 OCSTAMPQ9BR26 566 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 PARD6AQ9NPB6 346 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 PRSS50Q9UI38 385 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 GPR160Q9UJ42 338 aa9.21□□□□□ -0.94
CUX1-217ENST00000558836 ZNF318Q5VUA4 2279 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 A0A1W2PR80 420 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 ZNF250P15622 560 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 CHRFAM7AQ494W8 412 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 AADACL3Q5VUY0 350 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 COMMD7Q86VX2 200 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 FBXL14Q8N1E6 418 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 MITD1Q8WV92 249 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 TMEM230Q96A57 120 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 DMRTA2Q96SC8 542 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 GSX2Q9BZM3 304 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 hCG_38984A0A1B0GV85 526 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 RFPL4AA6NLU0 287 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 RFPL4AL1F8VTS6 287 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 RP2O75695 350 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 GLI4P10075 376 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 NPBWR2P48146 333 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 CCL11P51671 97 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 RAB14P61106 215 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 PCBD1P61457 104 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 HIKESHIQ53FT3 197 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 ESCO2Q56NI9 601 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 ZNF100Q8IYN0 542 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 FAM109AQ8N4B1 249 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 ZDHHC22Q8N966 263 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 RELL2Q8NC24 303 aaPredicted RBP9.2□□□□□ -0.94
CUX1-217ENST00000558836 OR51F2Q8NH61 342 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 CXorf58Q96LI9 332 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 Q96M66 194 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 SULT4A1Q9BR01 284 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 RTBDNQ9BSG5 229 aaPredicted RBP9.2□□□□□ -0.94
CUX1-217ENST00000558836 METTL9Q9H1A3 318 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 WDR13Q9H1Z4 485 aa9.2□□□□□ -0.94
CUX1-217ENST00000558836 MUC6Q6W4X9 2439 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 HMSDA8MTL9 139 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 I3L521 148 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 ALDH3B1P43353 468 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 RAB1AP62820 205 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 SLC10A1Q14973 349 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 MPPED2Q15777 294 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 PNLIPRP3Q17RR3 467 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 GSG1LQ6UXU4 331 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 APH1AQ96BI3 265 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 FER1L6-AS2Q96M78 137 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 NUDT16L1Q9BRJ7 211 aaKnown RBP9.19□□□□□ -0.94
CUX1-217ENST00000558836 PAPOLGQ9BWT3 736 aaKnown RBP9.19□□□□□ -0.94
CUX1-217ENST00000558836 ACKR4Q9NPB9 350 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 GHRLQ9UBU3 117 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 AK3Q9UIJ7 227 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 GPR132Q9UNW8 380 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 ESPL1Q14674 2120 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 FIGNL2A6NMB9 653 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 NME2P1O60361 137 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 SCO1O75880 301 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 RLN2P04090 185 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 PGAM2P15259 253 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 NME2P22392 152 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 SERPINF1P36955 418 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 NHLRC3Q5JS37 347 aa9.19□□□□□ -0.94
CUX1-217ENST00000558836 FAM74A1Q5RGS3 127 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms