RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 FAM157BP0CG42 384 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 UBCP0CG48 685 aaKnown RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 LYNX1P0DP58 116 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 CD37P11049 281 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 IGFBP3P17936 291 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 CCNOP22674 350 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 MNDAP41218 407 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 GUCA1AP43080 201 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 MMP15P51511 669 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 LSM6P62312 80 aaKnown RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 PLP2Q04941 152 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 SCGB2A2Q13296 93 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 MADCAM1Q13477 382 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 MSMPQ1L6U9 139 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 FBLN7Q53RD9 439 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 LRP11Q86VZ4 500 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 PAQR4Q8N4S7 273 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 DUSP18Q8NEJ0 188 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 SLC30A7Q8NEW0 376 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 OR51A4Q8NGJ6 313 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 ABHD1Q96SE0 405 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 SYT3Q9BQG1 590 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 THAP7Q9BT49 309 aaPredicted RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 MRPL37Q9BZE1 423 aaKnown RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 MOB1AQ9H8S9 216 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 CDH20Q9HBT6 801 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 DYNLRB1Q9NP97 96 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 CENPMQ9NSP4 180 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 RBFOX1Q9NWB1 397 aaKnown RBP10.6□□□□□ -0.71
SHMT2-230ENST00000557427 FAM206AQ9NX38 181 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 DUSP13Q9UII6 198 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 FBXL3Q9UKT7 428 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 GTF2A1LQ9UNN4 478 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 LHFPL6Q9Y693 200 aa10.6□□□□□ -0.71
SHMT2-230ENST00000557427 LINC00854A0A1B0GVQ3 168 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 TMEM269A0A1B0GVZ9 245 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 BOLA2-SMG1P6H3BVE0 249 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 WNT9BO14905 357 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 SULT1B1O43704 296 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 MSMBP08118 114 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 GLRXP35754 106 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 PSMA6P60900 246 aaKnown RBP10.59□□□□□ -0.71
SHMT2-230ENST00000557427 MRPS34P82930 218 aaKnown RBP10.59□□□□□ -0.71
SHMT2-230ENST00000557427 PABPC1L2AQ5JQF8 200 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 BCL2L15Q5TBC7 163 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 CORO6Q6QEF8 472 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 DPPA2Q7Z7J5 298 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 ELMOD2Q8IZ81 293 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 CMTM4Q8IZR5 234 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 OR10S1Q8NGN2 331 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 ENKURQ8TC29 256 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 C15orf40Q8WUR7 153 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 TAF15Q92804 592 aaKnown RBP eCLIP10.59□□□□□ -0.71
SHMT2-230ENST00000557427 SLC25A38Q96DW6 304 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 SUCNR1Q9BXA5 334 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 HDHD2Q9H0R4 259 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 LIN7BQ9HAP6 207 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 EMC7Q9NPA0 242 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 OR5V1Q9UGF6 321 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 STEAP1Q9UHE8 339 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 POLR1DQ9Y2S0 133 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 PPIAL4AQ9Y536 164 aa10.59□□□□□ -0.71
SHMT2-230ENST00000557427 LOC107986453A0A1B0GWG9 222 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 MEGF11A6BM72 1044 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 SLC17A2O00624 439 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 MAS1P04201 325 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 MMP7P09237 267 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 TRAPPC2P0DI81 140 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 TRAPPC2BP0DI82 140 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 ZNF32P17041 273 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 APLNRP35414 380 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 ALDH3B1P43353 468 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 PPOXP50336 477 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 MRPS10P82664 201 aaKnown RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 ODF4Q2M2E3 257 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 ALKBH6Q3KRA9 238 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 ZNF57Q68EA5 555 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 FAHD2BQ6P2I3 314 aaPredicted RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 CFAP77Q6ZQR2 320 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 CPEB3Q8NE35 698 aaKnown RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 OR1J2Q8NGS2 313 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 AKR7LQ8NHP1 331 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 CLDND2Q8NHS1 167 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 PPP1R14AQ96A00 147 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 NABP1Q96AH0 204 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 HAVCR1Q96D42 359 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 S100A16Q96FQ6 103 aaKnown RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 FAHD2AQ96GK7 314 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 C7orf50Q9BRJ6 194 aaKnown RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 PLEKHA1Q9HB21 404 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 CKLFQ9UBR5 152 aa10.58□□□□□ -0.72
SHMT2-230ENST00000557427 NUFIP1Q9UHK0 495 aaKnown RBP10.58□□□□□ -0.72
SHMT2-230ENST00000557427 SYNGR3O43761 229 aa10.57□□□□□ -0.72
SHMT2-230ENST00000557427 TTRP02766 147 aa10.57□□□□□ -0.72
SHMT2-230ENST00000557427 ERCC1P07992 297 aaPredicted RBP10.57□□□□□ -0.72
SHMT2-230ENST00000557427 MSR1P21757 451 aa10.57□□□□□ -0.72
SHMT2-230ENST00000557427 STOMP27105 288 aa10.57□□□□□ -0.72
SHMT2-230ENST00000557427 RAD52P43351 418 aa10.57□□□□□ -0.72
SHMT2-230ENST00000557427 UCP2P55851 309 aa10.57□□□□□ -0.72
SHMT2-230ENST00000557427 ERVS71-1P61550 626 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms