RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 PITPNAQ00169 270 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 GALK2Q01415 458 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CD47Q08722 323 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 MADCAM1Q13477 382 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 MED21Q13503 144 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 GRB7Q14451 532 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 PIGGQ5H8A4 983 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 TFDP3Q5H9I0 405 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CTSL3PQ5NE16 218 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 TIFABQ6ZNK6 161 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 PEX26Q7Z412 305 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 AQP12AQ8IXF9 295 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 GTPBP8Q8N3Z3 284 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CLDN19Q8N6F1 224 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 LINC01555Q8NAE3 123 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 SYT14Q8NB59 555 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CYB561A3Q8NBI2 242 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CCDC54Q8NEL0 328 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 PROKR2Q8NFJ6 384 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 OR4E2Q8NGC2 313 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 OR10A7Q8NGE5 316 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 OR5AR1Q8NGP9 310 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 RHEBL1Q8TAI7 183 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 TRMT10AQ8TBZ6 339 aaKnown RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 TFB1MQ8WVM0 346 aaKnown RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 RNF133Q8WVZ7 376 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CERS2Q96G23 380 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 OR5B2Q96R09 309 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 C12orf57Q99622 126 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 NIPSNAP1Q9BPW8 284 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 EBF4Q9BQW3 602 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 ZNF251Q9BRH9 671 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 TMEM246Q9BRR3 403 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 COPS4Q9BT78 406 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 HINT2Q9BX68 163 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 SRRQ9GZT4 340 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 MAGT1Q9H0U3 335 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 ING2Q9H160 280 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 ISG20L2Q9H9L3 353 aaKnown RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 ROPN1Q9HAT0 212 aaPredicted RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 HRASLS2Q9NWW9 162 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 RDH8Q9NYR8 311 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 TAS2R9Q9NYW1 312 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 CNOT2Q9NZN8 540 aaKnown RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 POFUT2Q9Y2G5 429 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 ALG6Q9Y672 507 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 FN1P02751 2386 aaKnown RBP3.26□□□□□ -1.89
PRPF39-209ENST00000556353 MED12LQ86YW9 2145 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 PLCE1Q9P212 2302 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 HEATR5AQ86XA9 2040 aa3.26□□□□□ -1.89
PRPF39-209ENST00000556353 SH3PXD2BA1X283 911 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 FBLL1A6NHQ2 334 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RFPL4AA6NLU0 287 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SERPINE3A8MV23 424 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RFPL4AL1F8VTS6 287 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 MKRN2OSH3BPM6 223 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 hCG_2039718K7EN88 272 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 CHP2O43745 196 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 FADS1O60427 444 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 OR1I1O60431 355 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 GATBO75879 557 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 IFNGP01579 166 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 PPBPP02775 128 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SERPIND1P05546 499 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SLC35G4P0C7Q5 338 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SMIM6P0DI80 62 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 DBTP11182 482 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RNH1P13489 461 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 UGT2B7P16662 529 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 RAB3AP20336 220 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 GSTM3P21266 225 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 PRDX3P30048 256 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 FOXN2P32314 431 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ARR3P36575 388 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 PPT1P50897 306 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 CCL11P51671 97 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 PRKXP51817 358 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 NKX2-5P52952 324 aaPredicted RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 BDH1Q02338 343 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TNFRSF9Q07011 255 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 PDIA2Q13087 525 aaKnown RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 AQP6Q13520 282 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 POU6F1Q14863 301 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TAF1AQ15573 450 aaPredicted RBP3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TGFBIQ15582 683 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TATDN3Q17R31 274 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 CCSMST1Q4G0I0 132 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 C5orf47Q569G3 176 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 OR2G6Q5TZ20 316 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 ZNF691Q5VV52 312 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TTC23Q5W5X9 447 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 H3F3CQ6NXT2 135 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SPESP1Q6UW49 350 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 COX15Q7KZN9 410 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 SERPINA9Q86WD7 417 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 OOSP2Q86WS3 158 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TMEM17Q86X19 198 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 TMEM126BQ8IUX1 230 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 LAX1Q8IWV1 398 aa3.25□□□□□ -1.89
PRPF39-209ENST00000556353 KLHDC8AQ8IYD2 350 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms