RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 A0A0U1RQV5 110 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 CCDC182A6NF36 153 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 A6NIN4 97 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 ODF3BA8MYP8 253 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 PRR23D1E9PI22 279 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 PGA5P0DJD9 388 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 PRR23D2P0DMB1 279 aaPredicted RBP12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 PRDX2P32119 198 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 MAP2K3P46734 347 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 TMEM236Q5W0B7 351 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 C16orf89Q6UX73 402 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 CPLX4Q7Z7G2 160 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 OR2T27Q8NH04 317 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 HIST1H2AAQ96QV6 131 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 OR8B4Q96RC9 309 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 WNT10AQ9GZT5 417 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 PBOV1Q9GZY1 135 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 GPR173Q9NS66 373 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 NECAP2Q9NVZ3 263 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 PIGLQ9Y2B2 252 aa12.46□□□□□ -0.41
CLSTN3-213ENST00000541953 TMEM269A0A1B0GVZ9 245 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 VGLL3A8MV65 326 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 F8VVB4 439 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 F8VWA3 439 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 MAGEB4O15481 346 aaPredicted RBP12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 SRSF10O75494 262 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 GYS2P54840 703 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 LOXL3P58215 753 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 BLCAPP62952 87 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 HSP90B2PQ58FF3 399 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 FOXB2Q5VYV0 432 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 PLEKHG7Q6ZR37 379 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 REC114Q7Z4M0 266 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 KRT77Q7Z794 578 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 COMMD2Q86X83 199 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 CALHM1Q8IU99 346 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 PAPD5Q8NDF8 572 aaKnown RBP12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 OR5A2Q8NGI9 324 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 GIPC3Q8TF64 312 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 SGCDQ92629 289 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 NRIP2Q9BQI9 281 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 HEXA-AS1Q9H8Q6 139 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 RAB18Q9NP72 206 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 MED4Q9NPJ6 270 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 USE1Q9NZ43 259 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 OR14J1Q9UGF5 321 aa12.45□□□□□ -0.42
CLSTN3-213ENST00000541953 A0A1W2PRX2 142 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 OR5B21A6NL26 309 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 C17orf98A8MV24 154 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 PRODHO43272 600 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 TTRP02766 147 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 TK1P04183 234 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 IGLL1P15814 213 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 PAICSP22234 425 aaKnown RBP12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 HAAOP46952 286 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 RPS7P62081 194 aaKnown RBP12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 APOFQ13790 326 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 SSX2Q16385 188 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 SMIM21Q3B7S5 101 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 SPATS1Q496A3 300 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 C11orf87Q6NUJ2 197 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 LIAT1Q6ZQX7 453 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 DHFR2Q86XF0 187 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 NDUFA11Q86Y39 141 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 ADGRG5Q8IZF4 528 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 ZNF671Q8TAW3 534 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 HES4Q9HCC6 221 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 LAMP5Q9UJQ1 280 aa12.44□□□□□ -0.42
CLSTN3-213ENST00000541953 PQLC2LA1A4F0 135 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 J3QT63 122 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 M0R129 80 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 ARG1P05089 322 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 PRKACGP22612 351 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 LGALS4P56470 323 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 CDK5Q00535 292 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 RIPPLY1Q0D2K3 151 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 CNN3Q15417 329 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 TCTEX1D4Q5JR98 221 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 ZNF626Q68DY1 528 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 TMEM42Q69YG0 159 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 BCDIN3DQ7Z5W3 292 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 ANGPTL5Q86XS5 388 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 ZNF561Q8N587 486 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 RASL12Q9NYN1 266 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 IL36RNQ9UBH0 155 aa12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 NUFIP1Q9UHK0 495 aaKnown RBP12.43□□□□□ -0.42
CLSTN3-213ENST00000541953 A0A1B0GTI1 187 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 ARRDC5A6NEK1 342 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 B2RBV5 119 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 K7EIL1 84 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 SLC1A7O00341 560 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 XPNPEP2O43895 674 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 NOS1APO75052 506 aaPredicted RBP12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 ZNF737O75373 536 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 NXPH2O95156 264 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 MPIG6BO95866 241 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 NRASP01111 189 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 ERVK11-1P61568 191 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 COL10A1Q03692 680 aa12.42□□□□□ -0.42
CLSTN3-213ENST00000541953 TRIM25Q14258 630 aaKnown RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms