RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 MYDGFQ969H8 173 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 FUNDC2Q9BWH2 189 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 GPR173Q9NS66 373 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 OR5V1Q9UGF6 321 aa12.55□□□□□ -0.4
CPSF1-208ENST00000532560 PQLC2LA1A4F0 135 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 H3BSH0 61 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 PHF1O43189 567 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 GATBO75879 557 aaKnown RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 TGM4P49221 684 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 NPY4RP50391 375 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 GNB2P62879 340 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 EMX1Q04741 257 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 MICBQ29980 383 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 DMRTC1Q5HYR2 192 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 FAHD2BQ6P2I3 314 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 LYPD2Q6UXB3 125 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 ZNF841Q6ZN19 808 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 PRIMA1Q86XR5 153 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 ZNF573Q86YE8 665 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 DRAXINQ8NBI3 349 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 PP6455Q8WZ26 134 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 AQP3Q92482 292 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 FAHD2AQ96GK7 314 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 TECTBQ96PL2 329 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 TMPRSS13Q9BYE2 586 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 CNOT2Q9NZN8 540 aaKnown RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 KAAG1Q9UBP8 84 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 CTSZQ9UBR2 303 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 CLN8Q9UBY8 286 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 HHLA2Q9UM44 414 aa12.54□□□□□ -0.4
CPSF1-208ENST00000532560 CAB39Q9Y376 341 aaPredicted RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 EXOSC1Q9Y3B2 195 aaKnown RBP12.54□□□□□ -0.4
CPSF1-208ENST00000532560 IGHV3OR15-7A0A075B7D8 119 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 A0A1B0GVG6 124 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 EFCAB10A6NFE3 127 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 A6NIN4 97 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 TMEM212A6NML5 194 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 PTGES3LE9PB15 166 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 TRAPPC2LH3BP13 241 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 RHBDL1O75783 438 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 GYPAP02724 150 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 MYL12AP19105 171 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 ETV1P50549 477 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 GBX2P52951 348 aaPredicted RBP12.53□□□□□ -0.4
CPSF1-208ENST00000532560 GP2P55259 537 aaKnown RBP12.53□□□□□ -0.4
CPSF1-208ENST00000532560 PAX2Q02962 417 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 ZNF846Q147U1 533 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 UBE2UQ5VVX9 321 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 WDR25Q64LD2 544 aaPredicted RBP12.53□□□□□ -0.4
CPSF1-208ENST00000532560 HAGHLQ6PII5 290 aaPredicted RBP12.53□□□□□ -0.4
CPSF1-208ENST00000532560 TMPRSS11AQ6ZMR5 421 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 GGHQ92820 318 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 DACT3Q96B18 629 aaPredicted RBP12.53□□□□□ -0.4
CPSF1-208ENST00000532560 YIPF6Q96EC8 236 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 TMEM80Q96HE8 168 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 WDR12Q9GZL7 423 aaKnown RBP12.53□□□□□ -0.4
CPSF1-208ENST00000532560 CCDC90BQ9GZT6 254 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 HMG20AQ9NP66 347 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 MMP26Q9NRE1 261 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 ERVK-18Q9QC07 812 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 JMJD1CQ15652 2540 aa12.53□□□□□ -0.4
CPSF1-208ENST00000532560 ARHGAP32A7KAX9 2087 aa12.52□□□□□ -0.4
CPSF1-208ENST00000532560 WNK2Q9Y3S1 2297 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 E9PI62 339 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 J3QT63 122 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 AKR7A2O43488 359 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 ADAM20O43506 726 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 ZFPL1O95159 310 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 IFNA2P01563 188 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 MPZP25189 248 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 SRP14P37108 136 aaKnown RBP12.52□□□□□ -0.41
CPSF1-208ENST00000532560 HAAOP46952 286 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 TBCEQ15813 527 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-208ENST00000532560 UBE2V2Q15819 145 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 DGUOKQ16854 277 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 CCDC58Q4VC31 144 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 STUMQ69YW2 141 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 Q6ZNX1 250 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 C1orf229Q6ZS94 237 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-208ENST00000532560 SLC16A12Q6ZSM3 486 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 UTS2BQ765I0 119 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF676Q8N7Q3 588 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 OR10AC1Q8NH08 325 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF671Q8TAW3 534 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 ADAT3Q96EY9 351 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-208ENST00000532560 NAA50Q9GZZ1 169 aaKnown RBP12.52□□□□□ -0.41
CPSF1-208ENST00000532560 DNTTIP1Q9H147 329 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 WDR13Q9H1Z4 485 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 PAK1IP1Q9NWT1 392 aaPredicted RBP12.52□□□□□ -0.41
CPSF1-208ENST00000532560 PSORS1C1Q9UIG5 152 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 SLC7A11Q9UPY5 501 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 POLDIP2Q9Y2S7 368 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 INSIG2Q9Y5U4 225 aa12.52□□□□□ -0.41
CPSF1-208ENST00000532560 IGHV2-70DA0A0C4DH43 119 aa12.51□□□□□ -0.41
CPSF1-208ENST00000532560 XPNPEP2O43895 674 aa12.51□□□□□ -0.41
CPSF1-208ENST00000532560 PFDN1O60925 122 aa12.51□□□□□ -0.41
CPSF1-208ENST00000532560 SERPINA3P01011 423 aa12.51□□□□□ -0.41
CPSF1-208ENST00000532560 AVPP01185 164 aa12.51□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF20P17024 532 aa12.51□□□□□ -0.41
CPSF1-208ENST00000532560 ZNF182P17025 639 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms