RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 TRBV9A0A0B4J1U6 114 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 OR5B21A6NL26 309 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 MMP9P14780 707 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 PVRP15151 417 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 CD22P20273 847 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 VDAC1P21796 283 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 PPICP45877 212 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 SLC37A1P57057 533 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 DCDP81605 110 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 TMEM136Q6ZRR5 245 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 RAB33BQ9H082 229 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 OR5AC2Q9NZP5 309 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 A4GNTQ9UNA3 340 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 HS3ST2Q9Y278 367 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 SNED1Q8TER0 1413 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 VIRMAQ69YN4 1812 aaKnown RBP10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 KIF13AQ9H1H9 1805 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 C7orf66A4D0T2 115 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 B4E171 279 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 GLI4P10075 376 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 PFN3P60673 137 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 ACVR1Q04771 509 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 SPATA45Q537H7 98 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 PTOV1Q86YD1 416 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 TMEM25Q86YD3 366 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 VSTM2AQ8TAG5 236 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 SGK494Q96LW2 274 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 GDE1Q9NZC3 331 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 ANKRD12Q6UB98 2062 aa10.09□□□□□ -0.79
LIMCH1-208ENST00000508501 ZNF749O43361 778 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 CDKN2AP42771 156 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 HAAOP46952 286 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 WNT3P56703 355 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 MAMSTRQ6ZN01 415 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 GLCCI1Q86VQ1 547 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 ISOC2Q96AB3 205 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 ZNF707Q96C28 371 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 MRGPRX4Q96LA9 322 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 CDCA3Q99618 268 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 PDLIM7Q9NR12 457 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 PPT2Q9UMR5 302 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 C1SP09871 688 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 RPL18Q07020 188 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 HFEQ30201 348 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 ASTLQ6HA08 431 aaPredicted RBP10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 ZNF600Q6ZNG1 722 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 AGBL5Q8NDL9 886 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 P2RX4Q99571 388 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 HDGFL3Q9Y3E1 203 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 TRGV10A0A0A0MS01 117 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 TAPBPO15533 448 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 ADAM20O43506 726 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 CA3P07451 260 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 NPPBP16860 134 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 FUT7Q11130 342 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 C20orf196Q8IYI0 205 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 OTOSQ8NHW6 89 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 WDR34Q96EX3 536 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 TAAR2Q9P1P5 351 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 A0A1W2PPC4 97 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 SIRPB1O00241 398 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 HSPB1P04792 205 aaKnown RBP10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 CYB5R2Q6BCY4 276 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 NUBPLQ8TB37 319 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 KIR3DX1Q9H7L2 352 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 DUSP13Q9UII6 198 aa10.08□□□□□ -0.8
LIMCH1-208ENST00000508501 F5H697 171 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 H3BP45 60 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 FXYD1O00168 92 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 CTAG2O75638 210 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 CXorf1O96002 111 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 MMP16P51512 607 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 RELBQ01201 579 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 Q56UQ5 140 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 SLC35E4Q6ICL7 350 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 RNF165Q6ZSG1 346 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 MIEN1Q9BRT3 115 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 B9D1Q9UPM9 204 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 ZNF195O14628 629 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 OPN1LWP04000 364 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 UBE2L3P68036 154 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 CST9Q5W186 159 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 NHLRC1Q6VVB1 395 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 SLC25A26Q70HW3 274 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 RBM14Q96PK6 669 aaKnown RBP10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 C16orf70Q9BSU1 422 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 TMEM38BQ9NVV0 291 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 SLC25A37Q9NYZ2 338 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 FOXJ2Q9P0K8 574 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 FBXO4Q9UKT5 387 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 A8MWL6 223 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 LINC01387J3KSC0 135 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 PLPP1O14494 284 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 SYNGR2O43760 224 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 LANCL1O43813 399 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 FOLR2P14207 255 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 PRAMEF20Q5VT98 475 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 SLC25A42Q86VD7 318 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 TTC9BQ8N6N2 239 aa10.07□□□□□ -0.8
LIMCH1-208ENST00000508501 RNF133Q8WVZ7 376 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms