RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 NRASP01111 189 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 BCL2L15Q5TBC7 163 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 KDM4DQ6B0I6 523 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 SLC35F2Q8IXU6 374 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 CD177Q8N6Q3 437 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 ZNF671Q8TAW3 534 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 C19orf12Q9NSK7 152 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 RASL12Q9NYN1 266 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 MRM2Q9UI43 246 aaKnown RBP15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 GTF2A1LQ9UNN4 478 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 R4GMQ9 66 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 V9GYS6 101 aa15.35■□□□□ 0.05
CCDC88B-206ENST00000473405 A0A1B0GTI1 187 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 PQLC2LA1A4F0 135 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 J3QT63 122 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 PGA5P0DJD9 388 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 ACSM1Q08AH1 577 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 SMIM21Q3B7S5 101 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 ZNF684Q5T5D7 378 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 DHRS7BQ6IAN0 325 aaPredicted RBP15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 Q6ZSR3 168 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 ELMOD2Q8IZ81 293 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 C17orf50Q8WW18 174 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 AJUBAQ96IF1 538 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 MNTQ99583 582 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 GABARAPL1Q9H0R8 117 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 C16orf95Q9H693 158 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 CLN6Q9NWW5 311 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 OR52A1Q9UKL2 312 aa15.34■□□□□ 0.05
CCDC88B-206ENST00000473405 BTBD17A6NE02 478 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 RFPL4AA6NLU0 287 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 RFPL4AL1F8VTS6 287 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 G3V2T6 193 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 PAHP00439 452 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 HAAOP46952 286 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 CEBPDP49716 269 aaPredicted RBP15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 CLVS2Q5SYC1 327 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 ASPHD2Q6ICH7 369 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 SSX6Q7RTT6 188 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 FAM185AQ8N0U4 392 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 OR14K1Q8NGZ2 314 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 IL4I1Q96RQ9 567 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 NRIP2Q9BQI9 281 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 HES4Q9HCC6 221 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 GPR173Q9NS66 373 aa15.33■□□□□ 0.04
CCDC88B-206ENST00000473405 A6NIN4 97 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 DHRS7CA6NNS2 312 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 DLGAP1O14490 977 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 NOS1APO75052 506 aaPredicted RBP15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 TSPAN9O75954 239 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 MPZP25189 248 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 DEFA6Q01524 100 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 EGR3Q06889 387 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 BNIP1Q12981 228 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 BLMHQ13867 455 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 ZNF573Q86YE8 665 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 GID4Q8IVV7 300 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 C11orf42Q8N5U0 333 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 BEND2Q8NDZ0 799 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 OR51G2Q8NGK0 314 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 OR5D13Q8NGL4 314 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 OR5R1Q8NH85 324 aa15.32■□□□□ 0.04
CCDC88B-206ENST00000473405 ZNF670-ZNF695F2Z2N8 137 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 H0YAE9 185 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 M0QZ24 198 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 ANGPTL7O43827 346 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 CCL1P22362 96 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 PRDX2P32119 198 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 TGFBR2P37173 567 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 CAPZA1P52907 286 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 MIDNQ504T8 468 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 CALHM1Q8IU99 346 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 ZDHHC13Q8IUH4 622 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 MKXQ8IYA7 352 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 BATF2Q8N1L9 274 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 ZNF561Q8N587 486 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 CIB1Q99828 191 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 RBM4BQ9BQ04 359 aaKnown RBP15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 H2AFY2Q9P0M6 372 aaPredicted RBP15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 SLC22A13Q9Y226 551 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 POLDIP2Q9Y2S7 368 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 SNX5Q9Y5X3 404 aa15.31■□□□□ 0.04
CCDC88B-206ENST00000473405 H3BUX3 64 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 SLC1A7O00341 560 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 TIMM23O14925 209 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 NXPH2O95156 264 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 FASP25445 335 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 ERVK11-1P61568 191 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 RPL31P62899 125 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 PDLIM3Q53GG5 364 aaPredicted RBP15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 TMEM200BQ69YZ2 307 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 ASRGL1Q7L266 308 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 AMIGO2Q86SJ2 522 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 TBX5Q99593 518 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 MMP27Q9H306 513 aa15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 SF3B6Q9Y3B4 125 aaKnown RBP15.3■□□□□ 0.04
CCDC88B-206ENST00000473405 TET2Q6N021 2002 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 A0A1W2PQL4 384 aaPredicted RBP15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 RPP14O95059 124 aaKnown RBP15.29■□□□□ 0.04
CCDC88B-206ENST00000473405 APOL3O95236 402 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms