RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 SIAH2O43255 324 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 HOXA6P31267 233 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 CTBSQ01459 385 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 ING1Q9UK53 422 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 M0R082 166 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 FAM87AP0C7U9 286 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 BCL3P20749 454 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 SULT1A1P50225 295 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 RNASEKQ6P5S7 137 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OR1A1Q9P1Q5 309 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 STRCP1A6NGW2 1772 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 H3BVH4 76 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 H7C1C5 153 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 ACRP10323 421 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 ACSM5Q6NUN0 579 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 MS4A6EQ96DS6 147 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 ZNF346Q9UL40 294 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 FRG2CA6NGY1 282 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 QDPRP09417 244 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 YBX1P67809 324 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 MPV17LQ2QL34 196 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OVCH2Q7RTZ1 564 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 NUFIP2Q7Z417 695 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OR2C3Q8N628 320 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM37Q8WXS4 190 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 WBP2Q969T9 261 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 LINC00615Q96LM1 132 aaPredicted RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 AUNIPQ9H7T9 357 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 TAAR3PQ9P1P4 343 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 MARF1Q9Y4F3 1742 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 AQP7P3A6NL99 342 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 SLC19A1P41440 591 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 HES1Q14469 280 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 UBE2V2Q15819 145 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 PARP12Q9H0J9 701 aaKnown RBP11.99□□□□□ -0.49
COL6A3-209ENST00000472056 TBX19O60806 448 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OR4B1Q8NGF8 309 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OR5M1Q8NGP8 315 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 OR1L3Q8NH93 324 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 EID2BQ96D98 161 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 RSG1Q9BU20 258 aa11.99□□□□□ -0.49
COL6A3-209ENST00000472056 ZNF98A6NK75 572 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 SP1P08047 785 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM65Q6PI78 240 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 PIGTQ969N2 578 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 ZNF764Q96H86 408 aaPredicted RBP11.98□□□□□ -0.49
COL6A3-209ENST00000472056 OR5AC1P0C628 307 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 NSUN5P2Q63ZY6 315 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 RCL1Q9Y2P8 373 aaKnown RBP11.98□□□□□ -0.49
COL6A3-209ENST00000472056 FABP2P12104 132 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 ACKR1Q16570 336 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 ABHD14BQ96IU4 210 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 MAGT1Q9H0U3 335 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 FAM3AP98173 230 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 PRAMEF20Q5VT98 475 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 OR5V1Q9UGF6 321 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 ST6GAL1P15907 406 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 STARD4Q96DR4 205 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 PMCHL2Q9BQD1 86 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 FAM234AQ9H0X4 552 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 GPR37O15354 613 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 DHRS3O75911 302 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 SFT2D2O95562 160 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 HIST1H1EP10412 219 aaKnown RBP11.98□□□□□ -0.49
COL6A3-209ENST00000472056 PPP2CBP62714 309 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 OR1C1Q15619 314 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM99Q8N816 258 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 RPS4Y2Q8TD47 263 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 TMEM70Q9BUB7 260 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 ZFP30Q9Y2G7 519 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 TCRBV5S1A1TA0A578 114 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 UQCRFS1P47985 274 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 ST3GAL2Q16842 350 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 BSXQ3C1V8 233 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 SLC35E3Q7Z769 313 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 CTU1Q7Z7A3 348 aaKnown RBP11.98□□□□□ -0.49
COL6A3-209ENST00000472056 CARFQ8N187 725 aa11.98□□□□□ -0.49
COL6A3-209ENST00000472056 GEMIN2O14893 280 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 TIMP1P01033 207 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 RPL34P49207 117 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 CDC34P49427 236 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 SLC38A11Q08AI6 406 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 RPS19BP1Q86WX3 136 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 FBXL6Q8N531 539 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 OR10G8Q8NGN5 311 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 VSTM2AQ8TAG5 236 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 MBD3L1Q8WWY6 194 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 SLC25A33Q9BSK2 321 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 MRPL13Q9BYD1 178 aaKnown RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 SLC25A37Q9NYZ2 338 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 VMA21Q3ZAQ7 101 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 MMP9P14780 707 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 IRS1P35568 1242 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 KLK11Q9UBX7 282 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 BCAT2O15382 392 aaPredicted RBP11.97□□□□□ -0.49
COL6A3-209ENST00000472056 TTRP02766 147 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 CLLU1OSQ5K130 101 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 AMMECR1LQ6DCA0 310 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 OR51E1Q8TCB6 317 aa11.97□□□□□ -0.49
COL6A3-209ENST00000472056 PTX4Q96A99 478 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms