RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	VNN3	Q9NY84	501 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	NLK	Q9UBE8	527 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	CYB5R1	Q9UHQ9	305 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	SIGLEC7	Q9Y286	467 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF256	Q9Y2P7	627 aa	Predicted RBP	4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	SMAD5-AS1	Q9Y6J3	95 aa		4.14	□□□□□ -1.75
PTPN4-209	ENST00000469511	KMT2A	Q03164	3969 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	PSMB11	A5LHX3	300 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR6C68	A6NDL8	312 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	TRIM64C	A6NLI5	447 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF850	A8MQ14	1090 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	C17orf98	A8MV24	154 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	SEC14L6	B5MCN3	397 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRR23D1	E9PI22	279 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	CCL24	O00175	119 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	POLR3G	O15318	223 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRR23D2	P0DMB1	279 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF823	P16415	610 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	GLRA1	P23415	457 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	ACKR3	P25106	362 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	OTX1	P32242	354 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	PYCR1	P32322	319 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	GRK5	P34947	590 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	NAA10	P41227	235 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	DYNLT3	P51808	116 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	CAPZA1	P52907	286 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	RPL31	P62899	125 aa	Known RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	ST3GAL3	Q11203	375 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	DYNC1I2	Q13409	638 aa	Known RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF260	Q3ZCT1	412 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	FAM53A	Q6NSI3	398 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	KCTD18	Q6PI47	426 aa	Predicted RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	C16orf89	Q6UX73	402 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	TMPRSS11F	Q6ZWK6	438 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	TCF23	Q7RTU1	214 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	VTCN1	Q7Z7D3	282 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	DHDDS	Q86SQ9	333 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	OSR2	Q8N2R0	312 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR51L1	Q8NGJ5	315 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR4K13	Q8NH42	304 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	SPSB4	Q96A44	273 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	CGREF1	Q99674	301 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	TM2D3	Q9BRN9	247 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC25A33	Q9BSK2	321 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	DNTTIP1	Q9H147	329 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	RPRD1B	Q9NQG5	326 aa	Known RBP	4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	THAP1	Q9NVV9	213 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	KIAA1456	Q9P272	454 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	PITPNC1	Q9UKF7	332 aa		4.13	□□□□□ -1.75
PTPN4-209	ENST00000469511	hCG_38984	A0A1B0GV85	526 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	RFPL4A	A6NLU0	287 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ANKRD30BL	A7E2S9	258 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	RFPL4AL1	F8VTS6	287 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	AHCYL1	O43865	530 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	GLCE	O94923	617 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	NDUFB2	O95178	105 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	TXNDC12	O95881	172 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	HIST1H1C	P16403	213 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	GCSH	P23434	173 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR3A4P	P47883	348 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	MRPL19	P49406	292 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	IFFO1	Q0D2I5	559 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRDX4	Q13162	271 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	SEC23B	Q15437	767 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	CYBRD1	Q53TN4	286 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	TNFAIP8L3	Q5GJ75	292 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	C9orf66	Q5T8R8	295 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ASPHD1	Q5U4P2	390 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	AGBL2	Q5U5Z8	902 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF770	Q6IQ21	691 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	MBOAT2	Q6ZWT7	520 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRSS45	Q7RTY3	260 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	DCXR	Q7Z4W1	244 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ZNF695	Q8IW36	515 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	TPRX1	Q8N7U7	411 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR11H6	Q8NGC7	330 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR51D1	Q8NGF3	324 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR10Z1	Q8NGY1	313 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR2AJ1	Q8NGZ0	328 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	OR5P3	Q8WZ94	311 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	PIGC	Q92535	297 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	SDSL	Q96GA7	329 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	TPD52L3	Q96J77	140 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	RNF170	Q96K19	258 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	PRRC1	Q96M27	445 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ERMAP	Q96PL5	475 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	CDRT15	Q96T59	188 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	PAPOLG	Q9BWT3	736 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	KRTAP4-5	Q9BYR2	181 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ROPN1B	Q9BZX4	212 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	NSRP1	Q9H0G5	558 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	DCLRE1B	Q9H816	532 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	ROPN1	Q9HAT0	212 aa	Predicted RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	CENPM	Q9NSP4	180 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	TBC1D23	Q9NUY8	699 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	SLC45A2	Q9UMX9	530 aa		4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	NOP16	Q9Y3C1	178 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	TBL2	Q9Y4P3	447 aa	Known RBP	4.12	□□□□□ -1.75
PTPN4-209	ENST00000469511	FAM172BP	A6NC97	362 aa		4.11	□□□□□ -1.75
PTPN4-209	ENST00000469511	DIRC3	C9JPN6	131 aa		4.11	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms