RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ACSM1Q08AH1 577 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 ZNF273Q14593 569 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 ASRGL1Q7L266 308 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 LHFPL4Q7Z7J7 247 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 ANGPTL5Q86XS5 388 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 AQP12AQ8IXF9 295 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 DYNAPQ8N1N2 210 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 C11orf42Q8N5U0 333 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 POC1AQ8NBT0 407 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 PAPD5Q8NDF8 572 aaKnown RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 OR5R1Q8NH85 324 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 ZNF671Q8TAW3 534 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 DMRTB1Q96MA1 342 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 NKX3-1Q99801 234 aaPredicted RBP9.41□□□□□ -0.9
USP4-204ENST00000416417 MROQ9BYG7 248 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 OR14J1Q9UGF5 321 aa9.41□□□□□ -0.9
USP4-204ENST00000416417 CHST1O43916 411 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 SRSF10O75494 262 aaKnown RBP9.4□□□□□ -0.91
USP4-204ENST00000416417 IGLV3-1P01715 115 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 ANXA8P13928 327 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 DAPP51397 102 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 RIDAP52758 137 aaKnown RBP9.4□□□□□ -0.91
USP4-204ENST00000416417 RPL31P62899 125 aaKnown RBP9.4□□□□□ -0.91
USP4-204ENST00000416417 GK3PQ14409 553 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 HABP2Q14520 560 aaPredicted RBP9.4□□□□□ -0.91
USP4-204ENST00000416417 ODF4Q2M2E3 257 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 C2orf68Q2NKX9 166 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 LRRC75BQ2VPJ9 315 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 ZNF684Q5T5D7 378 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 KCTD18Q6PI47 426 aaPredicted RBP9.4□□□□□ -0.91
USP4-204ENST00000416417 ZNF679Q8IYX0 411 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 KLHDC1Q8N7A1 406 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 OR5D13Q8NGL4 314 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 OR2T27Q8NH04 317 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 TRMT10AQ8TBZ6 339 aaKnown RBP9.4□□□□□ -0.91
USP4-204ENST00000416417 DNAJB9Q9UBS3 223 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 FBLN5Q9UBX5 448 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 ENPP5Q9UJA9 477 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 SLC22A13Q9Y226 551 aa9.4□□□□□ -0.91
USP4-204ENST00000416417 TRBV23-1A0A0A0MS06 115 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 OR5B21A6NL26 309 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 RPP14O95059 124 aaKnown RBP9.39□□□□□ -0.91
USP4-204ENST00000416417 NXPH2O95156 264 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 FAM107AO95990 144 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 PGA5P0DJD9 388 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 VSIG10L2P0DP72 767 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 JUNBP17275 347 aaPredicted RBP9.39□□□□□ -0.91
USP4-204ENST00000416417 EPHA2P29317 976 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 EFNB2P52799 333 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 CXCR4P61073 352 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 ROM1Q03395 351 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 FLOT2Q14254 428 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 HERPUD1Q15011 391 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 PTGES3Q15185 160 aaKnown RBP9.39□□□□□ -0.91
USP4-204ENST00000416417 CRIP3Q6Q6R5 217 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 KRT74Q7RTS7 529 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 SSX6Q7RTT6 188 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 SLC35F2Q8IXU6 374 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 PIFOQ8TCI5 191 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 CNN2Q99439 309 aaKnown RBP9.39□□□□□ -0.91
USP4-204ENST00000416417 TBX5Q99593 518 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 C1orf21Q9H246 121 aa9.39□□□□□ -0.91
USP4-204ENST00000416417 PAPOLBQ9NRJ5 636 aaKnown RBP9.39□□□□□ -0.91
USP4-204ENST00000416417 NUFIP1Q9UHK0 495 aaKnown RBP9.39□□□□□ -0.91
USP4-204ENST00000416417 A0A1B0GTI1 187 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 TCRBV3S1A0A5B6 114 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 PQLC2LA1A4F0 135 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 ACOD1A6NK06 481 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 LOC110117498-PIK3R3F6TDL0 507 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 F8VVB4 439 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 F8VWA3 439 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 J3QT63 122 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 SLC1A7O00341 560 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 DHRS3O75911 302 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 APOL3O95236 402 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 SMIM21Q3B7S5 101 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 ZNF829Q3KNS6 432 aaPredicted RBP9.38□□□□□ -0.91
USP4-204ENST00000416417 CLVS2Q5SYC1 327 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 BCL2L15Q5TBC7 163 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 LCN1P1Q5VSP4 162 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 DEGS2Q6QHC5 323 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 ZNF322Q6U7Q0 402 aaPredicted RBP9.38□□□□□ -0.91
USP4-204ENST00000416417 Q6ZTK2 550 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 MEPCEQ7L2J0 689 aaKnown RBP9.38□□□□□ -0.91
USP4-204ENST00000416417 TMEM219Q86XT9 240 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 CALHM1Q8IU99 346 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 TCEANCQ8N8B7 351 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 OR4C13Q8NGP0 309 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 OR14K1Q8NGZ2 314 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 IL4I1Q96RQ9 567 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 NRIP2Q9BQI9 281 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 MEGF9Q9H1U4 602 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 RASL12Q9NYN1 266 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 MRM2Q9UI43 246 aaKnown RBP9.38□□□□□ -0.91
USP4-204ENST00000416417 OR52A1Q9UKL2 312 aa9.38□□□□□ -0.91
USP4-204ENST00000416417 A0A0G2JK05 382 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 FAM230AA0A1W2PPH8 454 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 GYG2O15488 501 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 ZNF254O75437 659 aa9.37□□□□□ -0.91
USP4-204ENST00000416417 ATP6V1B1P15313 513 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms