RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ACOT7LQ6ZUV0 252 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 PEG10Q86TG7 708 aaKnown RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 OIT3Q8WWZ8 545 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 LRRC46Q96FV0 321 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 GUCD1Q96NT3 240 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 BCL2L14Q9BZR8 327 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 TNFSF18Q9UNG2 199 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 ST3GAL6Q9Y274 331 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 FLVCR1Q9Y5Y0 555 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 MFSD2BA6NFX1 497 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 CER1O95813 267 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 OR5H8P0DN80 308 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 MLF1P58340 268 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 RPS27AP62979 156 aaKnown RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 RAC1P63000 192 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 ZXDAP98168 799 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 FGL1Q08830 312 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 ZNF169Q14929 603 aaPredicted RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 CLPPQ16740 277 aaPredicted RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 PDSS1Q5T2R2 415 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 PPP1R32Q7Z5V6 425 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 TUSC5Q8IXB3 177 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 IL17BQ9UHF5 180 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 IGKV1-27A0A075B6S5 117 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 NRASP01111 189 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 CRHP06850 196 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 SULT4A1Q9BR01 284 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 REG4Q9BYZ8 158 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 AK3Q9UIJ7 227 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 ATMQ13315 3056 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 SELEP16581 610 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 CPT2P23786 658 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 HOXA4Q00056 320 aaPredicted RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 OR1F12Q8NHA8 337 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 NABP1Q96AH0 204 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 TSNAXQ99598 290 aaKnown RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 UTP23Q9BRU9 249 aaKnown RBP11.67□□□□□ -0.54
VPS54-203ENST00000409558 ANGPTL4Q9BY76 406 aa11.67□□□□□ -0.54
VPS54-203ENST00000409558 FAM74A7A6NL05 159 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 B8ZZF3 427 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 TOR1AO14656 332 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 DUSP3P51452 185 aaPredicted RBP11.66□□□□□ -0.54
VPS54-203ENST00000409558 FAM74A3Q4VXF1 159 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 ABHD17BQ5VST6 288 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 BVESQ8NE79 360 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 PKDREJQ9NTG1 2253 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 DUS4LO95620 317 aaKnown RBP11.66□□□□□ -0.54
VPS54-203ENST00000409558 GPM6AP51674 278 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 RIPPLY1Q0D2K3 151 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 PLEKHN1Q494U1 663 aaPredicted RBP11.66□□□□□ -0.54
VPS54-203ENST00000409558 RPL7L1Q6DKI1 246 aaKnown RBP11.66□□□□□ -0.54
VPS54-203ENST00000409558 C6orf15Q6UXA7 325 aaPredicted RBP11.66□□□□□ -0.54
VPS54-203ENST00000409558 HOGA1Q86XE5 327 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 LYPD6Q86Y78 171 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 OR6K3Q8NGY3 331 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 MRPL24Q96A35 216 aaKnown RBP11.66□□□□□ -0.54
VPS54-203ENST00000409558 HS3ST1O14792 307 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 FCGR2CP31995 323 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 PIGPP57054 158 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 HS3ST6Q96QI5 342 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 ARPC5LQ9BPX5 153 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.66□□□□□ -0.541e-6■■■■□ 24.6
VPS54-203ENST00000409558 KIF25Q9UIL4 384 aa11.66□□□□□ -0.54
VPS54-203ENST00000409558 A0A0D9SG52 128 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 MFNGO00587 321 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 BCL2L11O43521 198 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 CALHM1Q8IU99 346 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 SECTM1Q8WVN6 248 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 IL1F10Q8WWZ1 152 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 SLAMF9Q96A28 289 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 RTBDNQ9BSG5 229 aaPredicted RBP11.65□□□□□ -0.54
VPS54-203ENST00000409558 MAGT1Q9H0U3 335 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 METTL9Q9H1A3 318 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 LDAHQ9H6V9 325 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 SLC7A10Q9NS82 523 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 GTF3C1Q12789 2109 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 NGFP01138 241 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 MPLP40238 635 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 SUPT4H1P63272 117 aaKnown RBP11.65□□□□□ -0.54
VPS54-203ENST00000409558 ARF1P84077 181 aaKnown RBP11.65□□□□□ -0.54
VPS54-203ENST00000409558 GCNT2Q8N0V5 402 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 TMEM123Q8N131 208 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 MARS2Q96GW9 593 aaKnown RBP11.65□□□□□ -0.54
VPS54-203ENST00000409558 CRIM1Q9NZV1 1036 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 NUP50Q9UKX7 468 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 B3GALNT1O75752 331 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 PTGER4P35408 488 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 HAAOP46952 286 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 RBP2P50120 134 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 AKR1D1P51857 326 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 H3F3AP84243 136 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 C17orf78Q8N4C9 275 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 RDH5Q92781 318 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 MRPS24Q96EL2 167 aaKnown RBP11.65□□□□□ -0.54
VPS54-203ENST00000409558 MOB1AQ9H8S9 216 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 GPR132Q9UNW8 380 aa11.65□□□□□ -0.54
VPS54-203ENST00000409558 SHOXO15266 292 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 TSC22D1Q15714 1073 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 AADACL3Q5VUY0 350 aa11.64□□□□□ -0.55
VPS54-203ENST00000409558 OR56B2PQ8NGI1 322 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms