RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CAPNS2Q96L46 248 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 TAAR9Q96RI9 348 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 ATP5SQ99766 215 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 C2orf88Q9BSF0 95 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 C5orf66Q9H5L9 145 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 MBNL1Q9NR56 388 aaKnown RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 FOXJ2Q9P0K8 574 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 SLC45A1Q9Y2W3 748 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 F8VVB4 439 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 F8VWA3 439 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 FGF19O95750 216 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 NGFRP08138 427 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 DANCRP0C864 163 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 CTLA4P16410 223 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 KITLGP21583 273 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 HNRNPA2B1P22626 353 aaKnown RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 DCDP81605 110 aaKnown RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 FMODQ06828 376 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 KIR2DS3Q14952 304 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 CST6Q15828 149 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 TCTN1Q2MV58 587 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 TMEM31Q5JXX7 168 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 PRSS41Q7RTY9 318 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 C6orf201Q7Z4U5 140 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 HOGA1Q86XE5 327 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 BCORP1Q8N888 145 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 OR2I1PQ8NGU4 316 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 GALNT14Q96FL9 552 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 RNF122Q9H9V4 155 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 TMEM9BQ9NQ34 198 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF107Q9UII5 783 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 GPR132Q9UNW8 380 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 GBF1Q92538 1859 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 RBBP6Q7Z6E9 1792 aaKnown RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 NYNRINQ9P2P1 1898 aaKnown RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 HSBP1L1C9JCN9 74 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 HSD17B6O14756 317 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 CT62P0C5K7 136 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 IAPPP10997 89 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 PMCHP20382 165 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 EFNA3P52797 238 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 STPG1Q5TH74 334 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 FAM78BQ5VT40 261 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 ABLIM2Q6H8Q1 611 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 BRICD5Q6PL45 260 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 Q6ZNB5 142 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 HIST3H2BBQ8N257 126 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 CMTM2Q8TAZ6 248 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 VN1R3Q9BXE9 311 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF552Q9H707 407 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 GCM1Q9NP62 436 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 AURKAIP1Q9NWT8 199 aaPredicted RBP8.28□□□□□ -1.08
COL28A1-201ENST00000399429 NAGKQ9UJ70 344 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 ZNF236Q9UL36 1845 aa8.28□□□□□ -1.08
COL28A1-201ENST00000399429 RGPD3A6NKT7 1758 aaPredicted RBP8.27□□□□□ -1.08
COL28A1-201ENST00000399429 RGPD4Q7Z3J3 1758 aa8.27□□□□□ -1.08
COL28A1-201ENST00000399429 B4DEV8 164 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 CLDN1O95832 211 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 MGST1P10620 155 aaKnown RBP8.27□□□□□ -1.09
COL28A1-201ENST00000399429 BMP5P22003 454 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 SRPXP78539 464 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 GGTLC2Q14390 218 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 SPANXN5Q5MJ07 72 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 MYPOPQ86VE0 399 aaPredicted RBP8.27□□□□□ -1.09
COL28A1-201ENST00000399429 LRRC18Q8N456 261 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 DEFB118Q96PH6 123 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 HIST1H2BLQ99880 126 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 SOX7Q9BT81 388 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 DNAJC4Q9NNZ3 241 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 PRSS50Q9UI38 385 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 MMACHCQ9Y4U1 282 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 A0A1W2PP11 408 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 CXCL1P09341 107 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF708P17019 499 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 LSM6P62312 80 aaKnown RBP8.27□□□□□ -1.09
COL28A1-201ENST00000399429 NSDHLQ15738 373 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF260Q3ZCT1 412 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 C1orf140Q5VVS0 124 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 CBLN3Q6UW01 205 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 C16orf52Q8NHV5 167 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 KIAA1456Q9P272 454 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 YBX2Q9Y2T7 364 aaKnown RBP8.27□□□□□ -1.09
COL28A1-201ENST00000399429 DEDDO75618 318 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 FAM157CP0CG43 387 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 ADPRHP54922 357 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 BAXQ07812 192 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 C1QL3Q5VWW1 255 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 WDR5BQ86VZ2 330 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 TMEM183AQ8IXX5 376 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 C20orf196Q8IYI0 205 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 C7orf61Q8IZ16 206 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 ARHGEF39Q8N4T4 335 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 PCGF1Q9BSM1 259 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 METTL7AQ9H8H3 244 aa8.27□□□□□ -1.09
COL28A1-201ENST00000399429 H0Y8G0 127 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 EREGO14944 169 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ANGPTL7O43827 346 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 LMX1BO60663 402 aa8.26□□□□□ -1.09
COL28A1-201ENST00000399429 ZIC2O95409 532 aaPredicted RBP8.26□□□□□ -1.09
COL28A1-201ENST00000399429 COX5BP10606 129 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms