RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 MUCL1Q96DR8 90 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 BORCS8Q96FH0 119 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 MS4A3Q96HJ5 214 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 CST11Q9H112 138 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 SLC2A8Q9NY64 477 aa15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 INTS1Q8N201 2190 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-203ENST00000389856 ZNF736B4DX44 427 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 IFNA7P01567 189 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 ALDH3B1P43353 468 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 FUT6P51993 359 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 ATP1B3P54709 279 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 C3orf36Q3SXR2 165 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 ZNF260Q3ZCT1 412 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 PRR30Q53SZ7 412 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 FAAP20Q6NZ36 180 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 TEX261Q6UWH6 196 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 WDR31Q8NA23 367 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 OR8H1Q8NGG4 311 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 VKORC1Q9BQB6 163 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 KCNK15Q9H427 330 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 GPR173Q9NS66 373 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 STARD10Q9Y365 291 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 U3KQ87 197 aa15.7■□□□□ 0.1
CCDC88C-203ENST00000389856 IGKV1-9A0A0C4DH69 117 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 TMEM14DPA8MWL7 114 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 RAB27BO00194 218 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 RLN1P04808 185 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 SELEP16581 610 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 RBP2P50120 134 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 MTCP1P56278 107 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 LGALSLQ3ZCW2 172 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 GLIPR1L1Q6UWM5 242 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 RPRMLQ8N4K4 120 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 ST6GALNAC3Q8NDV1 305 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 SSC4DQ8WTU2 575 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 HIST1H2AAQ96QV6 131 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 PRRT1Q99946 306 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 PCDHB16Q9NRJ7 776 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 PIPOXQ9P0Z9 390 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 SLC23A1Q9UHI7 598 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 TINAGQ9UJW2 476 aa15.69■□□□□ 0.1
CCDC88C-203ENST00000389856 MED19A0JLT2 244 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 TUBAL3A6NHL2 446 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 ANKRD30BLA7E2S9 258 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 EEF1E1-BLOC1S5C9J1V9 151 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 CST4P01036 141 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 VSIG10L2P0DP72 767 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 BMP5P22003 454 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 WNT5AP41221 380 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 PTGFRP43088 359 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 PLCXD3Q63HM9 321 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 ZNF474Q6S9Z5 364 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 OR56B2PQ8NGI1 322 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 TNFAIP8L1Q8WVP5 186 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 PIGCQ92535 297 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 RND1Q92730 232 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 URM1Q9BTM9 101 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 A0A0G2JNJ9 132 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 HMSDA8MTL9 139 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 A8MXE2 369 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 G3V3Q6 166 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 H3BUI4 141 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 ERVH48-1M5A8F1 160 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 GSTP1P09211 210 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 TSPAN5P62079 268 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 PPP1CBP62140 327 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 TSC22D1Q15714 1073 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 MOB3CQ70IA8 216 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 ZNF680Q8NEM1 530 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 OR2AK2Q8NG84 335 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 NPRL2Q8WTW4 380 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 PAPOLGQ9BWT3 736 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 HEXA-AS1Q9H8Q6 139 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 Q9UFV3 132 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 PLEKHA6Q9Y2H5 1048 aa15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 NOP16Q9Y3C1 178 aaKnown RBP15.68■□□□□ 0.1
CCDC88C-203ENST00000389856 LOC400499M0QZD8 3231 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 A0A1W2PR80 420 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 SMPD2O60906 423 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 SLC22A5O76082 557 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 NGFP01138 241 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 IGLV1-44P01699 117 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 VSIG8P0DPA2 414 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 OR3A4PP47883 348 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 ZNF81P51508 661 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 LPCAT3Q6P1A2 487 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 FBXW12Q6X9E4 464 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 RFPL4BQ6ZWI9 263 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 ZDHHC23Q8IYP9 409 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 PAQR4Q8N4S7 273 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 OR4D10Q8NGI6 311 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 OR10R2Q8NGX6 335 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 BCL2L14Q9BZR8 327 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 SPEF1Q9Y4P9 236 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 MPC1Q9Y5U8 109 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 SLC25A15Q9Y619 301 aa15.67■□□□□ 0.1
CCDC88C-203ENST00000389856 FAM230AA0A1W2PPH8 454 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 PLSCR5A0PG75 271 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 TMEM82A0PJX8 343 aa15.66■□□□□ 0.1
CCDC88C-203ENST00000389856 CD300LBA8K4G0 201 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms