RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 SRFP11831 508 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 LIMK1P53667 647 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM241Q24JQ0 296 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 C20orf141Q9NUB4 165 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 PISDQ9UG56 409 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 HTRA3P83110 453 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 OR52B4Q8NGK2 314 aa9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 PCNPQ8WW12 178 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 LSM2Q9Y333 95 aaKnown RBP9.2□□□□□ -0.94
CCDC88A-202ENST00000336838 PDE6DO43924 150 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 YIF1AO95070 293 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF770Q6IQ21 691 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 SEZ6L2Q6UXD5 910 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 GPBAR1Q8TDU6 330 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 GPR119Q8TDV5 335 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ERGIC1Q969X5 290 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TAAR9Q96RI9 348 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TAAR3PQ9P1P4 343 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 DHCR7Q9UBM7 475 aaKnown RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ZMAT5Q9UDW3 170 aaKnown RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC45A2Q9UMX9 530 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 FGF2P09038 288 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 SEC11BP0C7V7 166 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 DEFA4P12838 97 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 UBALD2Q8IYN6 164 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 RELL2Q8NC24 303 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ZBTB34Q8NCN2 500 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 RCL1Q9Y2P8 373 aaKnown RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 NCOR1O75376 2440 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 PLPP3O14495 311 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 CD96P40200 585 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 VEGFBP49765 207 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 OR1D5P58170 312 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 SPANXN5Q5MJ07 72 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 FAAP20Q6NZ36 180 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 OR2A5Q96R48 311 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 GPX7Q96SL4 187 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ANGPTL4Q9BY76 406 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 COMMD5Q9GZQ3 224 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ARL16Q0P5N6 197 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNRF4Q8WWF5 429 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 KTI12Q96EK9 354 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF845Q96IR2 970 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 FNDC1Q4ZHG4 1894 aaPredicted RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 NLRC5Q86WI3 1866 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 RBFOX3A6NFN3 312 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 SMAD4Q13485 552 aaKnown RBP9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 POM121L2Q96KW2 1035 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 SIT1Q9Y3P8 196 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ABOP16442 354 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 DLK1P80370 383 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 VAX1Q5SQQ9 334 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 OR2C3Q8N628 320 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ADTRPQ96IZ2 230 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM210BQ96KR6 192 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 VSTM2LQ96N03 204 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 CALHM2Q9HA72 323 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 PCOLCE2Q9UKZ9 415 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 HSPB6O14558 160 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF79Q15937 498 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM211Q6ICI0 200 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM219AQ8IW50 185 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 NAT8Q9UHE5 227 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 HEATR5AQ86XA9 2040 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 CTRB1P17538 263 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 CTRB2Q6GPI1 263 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TMEM123Q8N131 208 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 FAM181AQ8N9Y4 354 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TSPAN32Q96QS1 320 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 TGIF2Q9GZN2 237 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 PPP1R3EQ9H7J1 279 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 GLRX2Q9NS18 164 aa9.19□□□□□ -0.94
CCDC88A-202ENST00000336838 HEXAP06865 529 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 VDAC1P21796 283 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 OR2V1Q8NHB1 315 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 GMPPAQ96IJ6 420 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 CISD3P0C7P0 127 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 HAAOP46952 286 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 GALR1P47211 349 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 MMP16P51512 607 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 CST9Q5W186 159 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 TCTEX1D1Q8N7M0 179 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 ASB10Q8WXI3 467 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 HLA-CQ95604 372 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 FANCMQ8IYD8 2048 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 C5orf49A4QMS7 147 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 ERGP11308 486 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 RHOBP62745 196 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 ZNF117Q03924 483 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 BSCL2Q96G97 398 aaPredicted RBP9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 POM121BA6NF01 834 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 HS3ST1O14792 307 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 LYRM7Q5U5X0 104 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 SLC25A26Q70HW3 274 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 MYEOVQ96EZ4 313 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 TIMD4Q96H15 378 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 WDR61Q9GZS3 305 aaKnown RBP9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 Q9N2K0 584 aa9.18□□□□□ -0.94
CCDC88A-202ENST00000336838 ICAM5Q9UMF0 924 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms