RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SLC22A6Q4U2R8 563 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 Q6ZR03 302 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 DMRTC2Q8IXT2 367 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 MKXQ8IYA7 352 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 OR56B1Q8NGI3 324 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 OR8S1Q8NH09 359 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 YIPF5Q969M3 257 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 PHF21AQ96BD5 680 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 ZC3HAV1LQ96H79 300 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 TMEM204Q9BSN7 226 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 ATG5Q9H1Y0 275 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 AUNIPQ9H7T9 357 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 SCPEP1Q9HB40 452 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 ABCB10Q9NRK6 738 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 ING4Q9UNL4 249 aa12.71□□□□□ -0.37
CCDC88C-202ENST00000334448 A0A0A6YYD4 124 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 A0A1W2PQ09 198 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A10PA6NDY2 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A18PA6NE21 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A16PA6NEW6 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A20PA6NIJ5 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A8PA6NJQ4 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A7PA6NKC0 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A22PA8MWA6 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A12PA8MX19 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A5PA8MXJ8 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A23PA8MXZ1 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 SHISA9B4DS77 424 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 ZG16O60844 167 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 CRTAPO75718 401 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 ADH4P08319 380 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A15PP0C7V4 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A13PP0C7W8 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A14PP0C7W9 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 FAM90A24PP0C7X0 464 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 GTF2F2P13984 249 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 LOXP28300 417 aaPredicted RBP12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 CD200P41217 278 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 HAAOP46952 286 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 SELENOVP59797 346 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 SSBP1Q04837 148 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 SCN1BQ07699 218 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 ASAH1Q13510 395 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 ARL6IP1Q15041 203 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 RSU1Q15404 277 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 OR8G1Q15617 311 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 ALKBH2Q6NS38 261 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 SLC25A26Q70HW3 274 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 WDR86Q86TI4 376 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 CELF2-AS1Q8N7Q2 184 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 OR10R2Q8NGX6 335 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 OR51F2Q8NH61 342 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 DEDD2Q8WXF8 326 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 AQP3Q92482 292 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 CXXC4Q9H2H0 198 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 C14orf119Q9NWQ9 140 aa12.7□□□□□ -0.38
CCDC88C-202ENST00000334448 CADP27708 2225 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 A0A1W2PP11 408 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 WIPF3A6NGB9 483 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 TUBAL3A6NHL2 446 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 SPRY1O43609 319 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 ANGPTL7O43827 346 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 NOS1APO75052 506 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 CA11O75493 328 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 CYB5AP00167 134 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 GSTP1P09211 210 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 IGFBP2P18065 325 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 ZNF154Q13106 437 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 ADIPOQQ15848 244 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 RGS21Q2M5E4 152 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 MOGAT2Q3SYC2 334 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 ZNF260Q3ZCT1 412 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 TRIQKQ629K1 86 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 SLC22A25Q6T423 547 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 LRP11Q86VZ4 500 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 SNX29P2Q8IUI4 249 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 IZUMO1Q8IYV9 350 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 OR8H2Q8N162 312 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 PIAS4Q8N2W9 510 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 MINDY2Q8NBR6 621 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 OR51T1Q8NGJ9 327 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 CHPT1Q8WUD6 406 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 DVL3Q92997 716 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 GAL3ST1Q99999 423 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 THAP7Q9BT49 309 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 MRPL37Q9BZE1 423 aaKnown RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 NKIRAS2Q9NYR9 191 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 TBC1D24Q9ULP9 559 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 POLDIP2Q9Y2S7 368 aa12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 KMT2BQ9UMN6 2715 aaPredicted RBP12.69□□□□□ -0.38
CCDC88C-202ENST00000334448 TRAV18A0A075B6X5 111 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 ZSCAN5BA6NJL1 495 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 DEFB108AA8MXU0 73 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 MFNGO00587 321 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 TPD52L2O43399 206 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 PTTG1O95997 202 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 CSTBP04080 98 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 CD3EP07766 207 aa12.68□□□□□ -0.38
CCDC88C-202ENST00000334448 SFTPBP07988 381 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms