RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 A8MV72 311 aaPredicted RBP8.62□□□□□ -1.03
HMGB3-201ENST00000325307 IGFBP3P17936 291 aaPredicted RBP8.62□□□□□ -1.03
HMGB3-201ENST00000325307 CD40P25942 277 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 FABP6P51161 128 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 CLDN12P56749 244 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 FBXL19-AS1Q494R0 122 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 SSX8Q7RTT4 187 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 CHST5Q9GZS9 411 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 IFITM5A6NNB3 132 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 DHRS7CA6NNS2 312 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 CD300LBA8K4G0 201 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 NRASP01111 189 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 THBDP07204 575 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 GCH1P30793 250 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 BTCP35070 178 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 OR8B8Q15620 311 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 PLCXD3Q63HM9 321 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 MOB3CQ70IA8 216 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 STX12Q86Y82 276 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 OR52N4Q8NGI2 321 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 PIGTQ969N2 578 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 C10orf35Q96D05 121 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 RHBDD3Q9Y3P4 386 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 A0A0A6YYJ9 748 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 TUBAL3A6NHL2 446 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF850A8MQ14 1090 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 PYCARD-AS1I3L0S3 204 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 AIPO00170 330 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 GMDSO60547 372 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 PTAFRP25105 342 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 KRBOX4Q5JUW0 171 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 SLC22A25Q6T423 547 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 C9orf62Q8N4C0 152 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 CSNK2A3Q8NEV1 391 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 FBXW5Q969U6 566 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 UPRTQ96BW1 309 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 SLC22A4Q9H015 551 aa8.62□□□□□ -1.03
HMGB3-201ENST00000325307 MRPS7Q9Y2R9 242 aaKnown RBP8.62□□□□□ -1.03
HMGB3-201ENST00000325307 FAM230AA0A1W2PPH8 454 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ANKRD30BLA7E2S9 258 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ABCD4O14678 606 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 C1QL1O75973 258 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 CLDN14O95500 239 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 RAB11BQ15907 218 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 C3orf36Q3SXR2 165 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 SEZ6L2Q6UXD5 910 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 KLF14Q8TD94 323 aaPredicted RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ITLN2Q8WWU7 325 aaPredicted RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF462Q96JM2 2506 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 F8W036 122 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF93P35789 620 aaPredicted RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 BSPH1Q075Z2 132 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 CNN3Q15417 329 aaKnown RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 UBE2V2Q15819 145 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF718Q3SXZ3 478 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 RGS7BPQ6MZT1 257 aaPredicted RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 FBXW12Q6X9E4 464 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 RFT1Q96AA3 541 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 SLC25A38Q96DW6 304 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 RALYQ9UKM9 306 aaKnown RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 SPATA2Q9UM82 520 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 SLC7A11Q9UPY5 501 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 SCO1O75880 301 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 MPV17P39210 176 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 Q6ZSR3 168 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 UTS2BQ765I0 119 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ZNF808Q8N4W9 903 aaPredicted RBP8.61□□□□□ -1.03
HMGB3-201ENST00000325307 DUSP18Q8NEJ0 188 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 LGALS14Q8TCE9 139 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 HIST1H2AAQ96QV6 131 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 DUSP13Q9UII6 198 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 GPR160Q9UJ42 338 aa8.61□□□□□ -1.03
HMGB3-201ENST00000325307 ADGRG4Q8IZF6 3080 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 IGKV1-9A0A0C4DH69 117 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 TIMM8AO60220 97 aaPredicted RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 RBBP9O75884 186 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 HTR2CP28335 458 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 RAB14P61106 215 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PRDX4Q13162 271 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 OR5D18Q8NGL1 313 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 LRRC20Q8TCA0 184 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 DVL3Q92997 716 aaPredicted RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 FOXRED1Q96CU9 486 aaPredicted RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 MARS2Q96GW9 593 aaKnown RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SORCS2Q96PQ0 1159 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 ESRP2Q9H6T0 727 aaKnown RBP8.6□□□□□ -1.03
HMGB3-201ENST00000325307 HEXA-AS1Q9H8Q6 139 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 STEAP1Q9UHE8 339 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SLC23A1Q9UHI7 598 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 RPS10-NUDT3A0A1W2PQS6 291 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 DPRXA6NFQ7 191 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 LYRM1O43325 122 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SLC22A5O76082 557 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PLATP00750 562 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 SELEP16581 610 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 PITPNBP48739 271 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 ADAM5Q6NVV9 412 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 BORCS8Q96FH0 119 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 C12orf57Q99622 126 aa8.6□□□□□ -1.03
HMGB3-201ENST00000325307 RBFOX1Q9NWB1 397 aaKnown RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms