RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CES1P1Q9UKY3 287 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 MRPS2Q9Y399 296 aaKnown RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 CHST2Q9Y4C5 530 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 A0A087WUJ7 227 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 CER1O95813 267 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 HPXP02790 462 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ARG1P05089 322 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 SEC11BP0C7V7 166 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 CXCL3P19876 107 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 CD82P27701 267 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 AGFG1P52594 562 aaKnown RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 PLCXD2Q0VAA5 305 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 TAS1R1Q7RTX1 841 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 H2BFWTQ7Z2G1 175 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 WDR5BQ86VZ2 330 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ZNF687Q8N1G0 1237 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ISOC2Q96AB3 205 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 DDIT4LQ96D03 193 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 KTI12Q96EK9 354 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 MOGAT1Q96PD6 335 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 SRD5A3Q9H8P0 318 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 OBP2BQ9NPH6 170 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 METTL1Q9UBP6 276 aaKnown RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 MBD1Q9UIS9 605 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 COL11A1P12107 1806 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 TNFSF14O43557 240 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 NUBP1P53384 320 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 PRRT3Q5FWE3 981 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 FAM78BQ5VT40 261 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 PRAMEF20Q5VT98 475 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ZNF385CQ66K41 422 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 FAM57BQ71RH2 274 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 Q7L0L9 218 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 BATF2Q8N1L9 274 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 LRRC18Q8N456 261 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 OR51H1Q8NH63 302 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 KISS1RQ969F8 398 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 C10orf35Q96D05 121 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 SLC35A4Q96G79 324 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 PRTFDC1Q9NRG1 225 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 TIMM9Q9Y5J7 89 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 PIAS3Q9Y6X2 628 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 MED19A0JLT2 244 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 GPR12P47775 334 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 NPBWR2P48146 333 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ZXDCQ2QGD7 858 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 VAX1Q5SQQ9 334 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 LY6G5CQ5SRR4 150 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 GRINAQ7Z429 371 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 CALHM1Q8IU99 346 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 OR5M1Q8NGP8 315 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 UBALD1Q8TB05 177 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ZNF418Q8TF45 676 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 LRFN3Q9BTN0 628 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 SFXN1Q9H9B4 322 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 PCOLCE2Q9UKZ9 415 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 CEACAM18A8MTB9 384 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 H3BML4 177 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 WNT11O96014 354 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ACRP10323 421 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 FCARP24071 287 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 CTGFP29279 349 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 DAP3P51398 398 aaKnown RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 HERVK_113P61574 105 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 YPEL5P62699 121 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 SAPCD1Q5SSQ6 148 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 GLYATL3Q5SZD4 288 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ASTLQ6HA08 431 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 FBXO46Q6PJ61 603 aaPredicted RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 SLC39A5Q6ZMH5 540 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 MRPL52Q86TS9 123 aaKnown RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 RBM45Q8IUH3 476 aaKnown RBP5.75□□□□□ -1.49
VPS35-201ENST00000299138 OR5AU1Q8NGC0 362 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 TMEM255BQ8WV15 326 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 MYEOVQ96EZ4 313 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 C2orf50Q96LR7 162 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 ELOVL3Q9HB03 270 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 FOXJ2Q9P0K8 574 aa5.75□□□□□ -1.49
VPS35-201ENST00000299138 A0A1W2PR48 441 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 FEZF1A0PJY2 475 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SERINC4A6NH21 518 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 CTSVO60911 334 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 GJB3O75712 270 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 SOX18P35713 384 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TAS2R45P59539 299 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 BTG2P78543 158 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 HLA-BQ31612 363 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 MIDNQ504T8 468 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 AGBL4Q5VU57 503 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 YOD1Q5VVQ6 348 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 RTN4RL1Q86UN2 441 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 GNPNAT1Q96EK6 184 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 PIK3IP1Q96FE7 263 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 OPN3Q9H1Y3 402 aaPredicted RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 UQCC1Q9NVA1 299 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 NAGKQ9UJ70 344 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 TRAV27A0A087WT01 109 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 A0A1B0GW64 132 aa5.74□□□□□ -1.49
VPS35-201ENST00000299138 ZC3H12DA2A288 527 aaKnown RBP5.74□□□□□ -1.49
VPS35-201ENST00000299138 F8VVB4 439 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms