RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MRGPRGQ86SM5 289 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 ABHD3Q8WU67 409 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 LRRC29Q8WV35 223 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 FBXO17Q96EF6 278 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 MTFP1Q9UDX5 166 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 SSUH2Q9Y2M2 353 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 RBMX2Q9Y388 322 aaKnown RBP11.99□□□□□ -0.49
LDLR-201ENST00000252444 TMEM272A0A1B0GTI8 110 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 MS4A18H0YCH9 400 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 HS3ST1O14792 307 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 OR2F2O95006 317 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 CT45A6P0DMU7 189 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 CT45A5P0DMU8 189 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 CT45A7P0DMV0 189 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 OR2F1Q13607 317 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 MS4A18Q3C1V0 323 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 CT45A1Q5HYN5 189 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 OR2T2Q6IF00 324 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 CT45A3Q8NHU0 189 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 FAM212BQ9NTI7 297 aaPredicted RBP11.99□□□□□ -0.49
LDLR-201ENST00000252444 IL17BQ9UHF5 180 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 DUXBA0A1W2PPF3 345 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 TAS2R30P59541 319 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 TLE4Q04727 773 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 FNDC7Q5VTL7 733 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 LYG2Q86SG7 212 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 SHISA5Q8N114 240 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 LFNGQ8NES3 379 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 FAM216AQ8WUB2 273 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 TMEM171Q8WVE6 324 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 AKR1E2Q96JD6 320 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 ZNF436Q9C0F3 470 aaPredicted RBP11.99□□□□□ -0.49
LDLR-201ENST00000252444 MSRB2Q9Y3D2 182 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 MPPED2Q15777 294 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 OR10Z1Q8NGY1 313 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 TERB2Q8NHR7 220 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 AICDAQ9GZX7 198 aa11.99□□□□□ -0.49
LDLR-201ENST00000252444 IGKV1D-42A0A075B6H8 117 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 TRAF3IP2O43734 574 aaPredicted RBP11.98□□□□□ -0.49
LDLR-201ENST00000252444 SS18L1O75177 396 aaPredicted RBP11.98□□□□□ -0.49
LDLR-201ENST00000252444 ALX3O95076 343 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 MBP02144 154 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 OR8U8P0C7N1 319 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 CALCRP30988 508 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 MDP1Q86V88 176 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 MMP28Q9H239 520 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 GOLGA4Q13439 2230 aaKnown RBP11.98□□□□□ -0.49
LDLR-201ENST00000252444 CEACAM21Q3KPI0 293 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 Q6ZNX1 250 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 ZNF485Q8NCK3 441 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 POFUT1Q9H488 388 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 OR5V1Q9UGF6 321 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 ST6GALNAC2Q9UJ37 374 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 SMAD9O15198 467 aaKnown RBP11.98□□□□□ -0.49
LDLR-201ENST00000252444 SPRY3O43610 288 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 TGM6O95932 706 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 LRRC37A5PQ49AS3 106 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 ZNF529Q6P280 563 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 BRICD5Q6PL45 260 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 VSTM2AQ8TAG5 236 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 KCNE5Q9UJ90 142 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 TSPO2Q5TGU0 170 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 C10orf111Q8N326 155 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 GCSAMQ8N6F7 178 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 BMPERQ8N8U9 685 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 GNPNAT1Q96EK6 184 aaPredicted RBP11.98□□□□□ -0.49
LDLR-201ENST00000252444 UCN2Q96RP3 112 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 UFSP2Q9NUQ7 469 aa11.98□□□□□ -0.49
LDLR-201ENST00000252444 ZFC3H1O60293 1989 aaKnown RBP11.98□□□□□ -0.49
LDLR-201ENST00000252444 MEIS3P1A6NDR6 274 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 NGFP01138 241 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 ERHP84090 104 aaKnown RBP11.97□□□□□ -0.49
LDLR-201ENST00000252444 PEA15Q15121 130 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 PDLIM3Q53GG5 364 aaPredicted RBP11.97□□□□□ -0.49
LDLR-201ENST00000252444 LYPD8Q6UX82 237 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 MAP6Q96JE9 813 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 FABP7O15540 132 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 CTAG2O75638 210 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 TBX6O95947 436 aaPredicted RBP11.97□□□□□ -0.49
LDLR-201ENST00000252444 S100A9P06702 114 aaKnown RBP11.97□□□□□ -0.49
LDLR-201ENST00000252444 RPS4Y2Q8TD47 263 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 SLC35E1Q96K37 410 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 UHRF2Q96PU4 802 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 C1QTNF6Q9BXI9 259 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 HEXA-AS1Q9H8Q6 139 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 RPA2P15927 270 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 CA6P23280 308 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 CD200P41217 278 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 NPY4RP50391 375 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 ATXN7L3Q14CW9 347 aaPredicted RBP11.97□□□□□ -0.49
LDLR-201ENST00000252444 TMEM128Q5BJH2 165 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 C1QL3Q5VWW1 255 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 TIPARPQ7Z3E1 657 aaKnown RBP11.97□□□□□ -0.49
LDLR-201ENST00000252444 NRARPQ7Z6K4 114 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 OR51S1Q8NGJ8 323 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 FRRS1LQ9P0K9 344 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 TMED3Q9Y3Q3 217 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 SLC51BQ86UW2 128 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 OSGIN2Q9Y236 505 aa11.97□□□□□ -0.49
LDLR-201ENST00000252444 TSPAN15O95858 294 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms