RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 PIFOQ8TCI5 191 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 THEM6Q8WUY1 208 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 ZNF488Q96MN9 340 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 CDCA4Q9BXL8 241 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 PRSS22Q9GZN4 317 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 RGCCQ9H4X1 137 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 GORASP2Q9H8Y8 452 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 VIPAS39Q9H9C1 493 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 TCF19Q9Y242 345 aa12.14□□□□□ -0.47
SYNE2-228ENST00000639659 hCG_1809904A0A1W2PP81 198 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 A0A1W2PPE2 198 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 A0A1W2PR64 198 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 A0A1W2PRV1 198 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 MEGF11A6BM72 1044 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 RFPL4AA6NLU0 287 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 ADARB2-AS1A8MUL3 147 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 RFPL4AL1F8VTS6 287 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 K7EIL1 84 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 CCNB2O95067 398 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 CST4P01036 141 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 GASTP01350 101 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 PF4P02776 101 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 ARG1P05089 322 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 DCTDP32321 178 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 BLVRAP53004 296 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 HAGHLQ6PII5 290 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-228ENST00000639659 CCBE1Q6UXH8 406 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-228ENST00000639659 OR8B12Q8NGG6 310 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 OR2T27Q8NH04 317 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 RPS4Y2Q8TD47 263 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 CMTM5Q96DZ9 223 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 LYZL4Q96KX0 146 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 NMNAT2Q9BZQ4 307 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 OR51V1Q9H2C8 321 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 ARGLU1Q9NWB6 273 aaPredicted RBP12.13□□□□□ -0.47
SYNE2-228ENST00000639659 IL20Q9NYY1 176 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 USE1Q9NZ43 259 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 ZNF222Q9UK12 451 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 LYVE1Q9Y5Y7 322 aa12.13□□□□□ -0.47
SYNE2-228ENST00000639659 SLC1A7O00341 560 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 ARPC2O15144 300 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 SASH3O75995 380 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 LYNP07948 512 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 GNG3P63215 75 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 DYNC1I2Q13409 638 aaKnown RBP12.12□□□□□ -0.47
SYNE2-228ENST00000639659 ZNF273Q14593 569 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 SSX2Q16385 188 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 KHDC1LQ5JSQ8 128 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 LINC01590Q5TEZ4 76 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 PLCXD3Q63HM9 321 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 TMEM200BQ69YZ2 307 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 MOB3CQ70IA8 216 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 SHFQ7M4L6 423 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 IQCF1Q8N6M8 205 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 CD177Q8N6Q3 437 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 OR5K1Q8NHB7 308 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 ZNF671Q8TAW3 534 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 IL1RAPQ9NPH3 570 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 OR14J1Q9UGF5 321 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 BAIAP2Q9UQB8 552 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 RYR3Q15413 4870 aa12.12□□□□□ -0.47
SYNE2-228ENST00000639659 F2RL2O00254 374 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 SELENOFO60613 162 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 FAHP16930 419 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 SMIM21Q3B7S5 101 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 ACP7Q6ZNF0 438 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 Q6ZS46 218 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 CCDC121Q6ZUS5 278 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 FOXRED1Q96CU9 486 aaPredicted RBP12.11□□□□□ -0.47
SYNE2-228ENST00000639659 SDSLQ96GA7 329 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 OR51I2Q9H344 312 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 PITPNC1Q9UKF7 332 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 U3KQV3 271 aa12.11□□□□□ -0.47
SYNE2-228ENST00000639659 A6NDX4 124 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 KRT36O76013 467 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 JUNBP17275 347 aaPredicted RBP12.1□□□□□ -0.47
SYNE2-228ENST00000639659 MAP2K3P46734 347 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 PSMA6P60900 246 aaKnown RBP12.1□□□□□ -0.47
SYNE2-228ENST00000639659 BLCAPP62952 87 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 CD69Q07108 199 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 FAM76BQ5HYJ3 339 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 Q8N2B8 174 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 OR5AU1Q8NGC0 362 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 TEX47Q8TBZ9 253 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 AQP3Q92482 292 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 MUC13Q9H3R2 512 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 NIPAL2Q9H841 368 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 HILPDAQ9Y5L2 63 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 COL7A1Q02388 2944 aa12.1□□□□□ -0.47
SYNE2-228ENST00000639659 DNAH3Q8TD57 4116 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 WI2-2373I1.2A0A1W2PRP0 233 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 H3BN98 237 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 PSMD9O00233 223 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 SYNGR1O43759 233 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 MTRF1O75570 445 aaKnown RBP12.09□□□□□ -0.47
SYNE2-228ENST00000639659 NXPH2O95156 264 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 ALDOBP05062 364 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 HOXD3P31249 432 aaPredicted RBP12.09□□□□□ -0.47
SYNE2-228ENST00000639659 PRDX2P32119 198 aa12.09□□□□□ -0.47
SYNE2-228ENST00000639659 SLC35A2P78381 396 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 124.2 ms