RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 LY6EQ16553 131 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 GFOD2Q3B7J2 385 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 KLHL22Q53GT1 634 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 TEX36Q5VZQ5 186 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 ZNF826PQ6ZT77 177 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 C11orf53Q8IXP5 236 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 PNKDQ8N490 385 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 OR1M1Q8NGA1 313 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 DMRTB1Q96MA1 342 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 NPFFR1Q9GZQ6 430 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 FAM234AQ9H0X4 552 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 ABCB9Q9NP78 766 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 BRD7Q9NPI1 651 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 PAPOLBQ9NRJ5 636 aaKnown RBP13.26□□□□□ -0.29
CLN3-264ENST00000637985 ONECUT1Q9UBC0 465 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 KAAG1Q9UBP8 84 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 LAMP5Q9UJQ1 280 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 MPC1Q9Y5U8 109 aa13.26□□□□□ -0.29
CLN3-264ENST00000637985 ANXA2P2A6NMY6 339 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 GYPAP02724 150 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 MUC1P15941 1255 aaPredicted RBP13.25□□□□□ -0.29
CLN3-264ENST00000637985 ALOX5APP20292 161 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 NAA10P41227 235 aaPredicted RBP13.25□□□□□ -0.29
CLN3-264ENST00000637985 CRISP1P54107 249 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 PSMA6P60900 246 aaKnown RBP13.25□□□□□ -0.29
CLN3-264ENST00000637985 SNAPC1Q16533 368 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 CASC10Q5T4H9 136 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 TMEM236Q5W0B7 351 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 FAHD1Q6P587 224 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 DEGS2Q6QHC5 323 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 WDR86Q86TI4 376 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 FAM90A1Q86YD7 464 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 Q8N7P7 452 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 BBS1Q8NFJ9 593 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 ST8SIA4Q92187 359 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 TNFRSF14Q92956 283 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 ITFG2Q969R8 447 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 UTP4Q969X6 686 aaKnown RBP13.25□□□□□ -0.29
CLN3-264ENST00000637985 MICU1Q9BPX6 476 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 PAPOLGQ9BWT3 736 aaKnown RBP13.25□□□□□ -0.29
CLN3-264ENST00000637985 CADM1Q9BY67 442 aaKnown RBP13.25□□□□□ -0.29
CLN3-264ENST00000637985 YIPF3Q9GZM5 350 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 TLNRD1Q9H1K6 362 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 TVP23BQ9NYZ1 205 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 RHBDD3Q9Y3P4 386 aa13.25□□□□□ -0.29
CLN3-264ENST00000637985 ACOD1A6NK06 481 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 CST4P01036 141 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 RASSF2P50749 326 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 ESRRGP62508 458 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 SLC35A2P78381 396 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 ACSM1Q08AH1 577 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 BNIP1Q12981 228 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 KLRD1Q13241 179 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 APOFQ13790 326 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 MICBQ29980 383 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 LCN1P1Q5VSP4 162 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 KCTD18Q6PI47 426 aaPredicted RBP13.24□□□□□ -0.29
CLN3-264ENST00000637985 WDR82Q6UXN9 313 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 KRT77Q7Z794 578 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 CMTM4Q8IZR5 234 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 FGFRL1Q8N441 504 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 OR5K1Q8NHB7 308 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 LRRC29Q8WV35 223 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 C12orf43Q96C57 262 aaKnown RBP13.24□□□□□ -0.29
CLN3-264ENST00000637985 RCC1LQ96I51 464 aaKnown RBP13.24□□□□□ -0.29
CLN3-264ENST00000637985 TEAD3Q99594 435 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 RTL8AQ9BWD3 113 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 PRRG3Q9BZD7 231 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 ZNF702PQ9H963 129 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 DNAJB11Q9UBS4 358 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 LRP12Q9Y561 859 aa13.24□□□□□ -0.29
CLN3-264ENST00000637985 TMEM210A6NLX4 147 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 CHST1O43916 411 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 DUS4LO95620 317 aaKnown RBP13.23□□□□□ -0.29
CLN3-264ENST00000637985 FAHP16930 419 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 DAPP51397 102 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 UBE2E1P51965 193 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 DCTN2Q13561 401 aaKnown RBP13.23□□□□□ -0.29
CLN3-264ENST00000637985 HABP2Q14520 560 aaPredicted RBP13.23□□□□□ -0.29
CLN3-264ENST00000637985 PTGES3Q15185 160 aaKnown RBP13.23□□□□□ -0.29
CLN3-264ENST00000637985 Q8N2B8 174 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 OR8B12Q8NGG6 310 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 C17orf50Q8WW18 174 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 MROQ9BYG7 248 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 KLHDC2Q9Y2U9 406 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 TMEM14AQ9Y6G1 99 aa13.23□□□□□ -0.29
CLN3-264ENST00000637985 A0A0U1RQV5 110 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 LCE6AA0A183 80 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 ZNF254O75437 659 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 ATP5HO75947 161 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 ACKR3P25106 362 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 HOXD3P31249 432 aaPredicted RBP13.22□□□□□ -0.29
CLN3-264ENST00000637985 DCTDP32321 178 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 CSNK2BP67870 215 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 PRDX4Q13162 271 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 AANATQ16613 207 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 LRRC75BQ2VPJ9 315 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 FAM76BQ5HYJ3 339 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 KRT74Q7RTS7 529 aa13.22□□□□□ -0.29
CLN3-264ENST00000637985 SLC36A1Q7Z2H8 476 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms