RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MT-ND2P03891 347 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 RPS2P15880 293 aaKnown RBP15.29■□□□□ 0.04
CLN3-259ENST00000637551 MYF6P23409 242 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 NANOS3P60323 173 aaKnown RBP15.29■□□□□ 0.04
CLN3-259ENST00000637551 ST3GAL4Q11206 333 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 CNN3Q15417 329 aaKnown RBP15.29■□□□□ 0.04
CLN3-259ENST00000637551 ATPAF1Q5TC12 328 aaPredicted RBP15.29■□□□□ 0.04
CLN3-259ENST00000637551 PPP1R14AQ96A00 147 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 SPSB1Q96BD6 273 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 PKIBQ9C010 78 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 SHARPINQ9H0F6 387 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 HIF1ANQ9NWT6 349 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 UBAP1Q9NZ09 502 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 SLC7A11Q9UPY5 501 aa15.29■□□□□ 0.04
CLN3-259ENST00000637551 PQLC2LA1A4F0 135 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 J3QT63 122 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 TNFRSF13BO14836 293 aaPredicted RBP15.28■□□□□ 0.04
CLN3-259ENST00000637551 PLPP2O43688 288 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 FAM157CP0CG43 387 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 PPIAL4GP0DN37 164 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 GPM6AP51674 278 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 FUT6P51993 359 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 BDH1Q02338 343 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 ZNF676Q8N7Q3 588 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 LRRC29Q8WV35 223 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 GGHQ92820 318 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 SSBP3Q9BWW4 388 aaPredicted RBP15.28■□□□□ 0.04
CLN3-259ENST00000637551 RAB26Q9ULW5 256 aa15.28■□□□□ 0.04
CLN3-259ENST00000637551 ZNF732B4DXR9 585 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 CDIPTO14735 213 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 CD1AP06126 327 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 PRKACBP22694 351 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 VHLP40337 213 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 CDK5R1Q15078 307 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 C6orf141Q5SZD1 244 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 LAIR2Q6ISS4 152 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 KCTD8Q6ZWB6 473 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 MOB3CQ70IA8 216 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 PARP16Q8N5Y8 322 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 ZNF485Q8NCK3 441 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 OR5AK2Q8NH90 309 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 AQP3Q92482 292 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 THRSPQ92748 146 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 SMIM19Q96E16 107 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 FGF23Q9GZV9 251 aaPredicted RBP15.27■□□□□ 0.04
CLN3-259ENST00000637551 ISG20L2Q9H9L3 353 aaKnown RBP15.27■□□□□ 0.04
CLN3-259ENST00000637551 BABAM2Q9NXR7 383 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 SCN3BQ9NY72 215 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 OR5V1Q9UGF6 321 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 PCDHGB5Q9Y5G0 923 aa15.27■□□□□ 0.04
CLN3-259ENST00000637551 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.26■□□□□ 0.03
CLN3-259ENST00000637551 OGG1O15527 345 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 ZFPL1O95159 310 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 ECDO95905 644 aaPredicted RBP15.26■□□□□ 0.03
CLN3-259ENST00000637551 PITPNBP48739 271 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 ETV1P50549 477 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 ACSM1Q08AH1 577 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 IL24Q13007 206 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 CR1LQ2VPA4 569 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 CEP78Q5JTW2 689 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 FAM120AOSQ5T036 256 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 CD276Q5ZPR3 534 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 IZUMO2Q6UXV1 221 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 ZNF826PQ6ZT77 177 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 ZNF771Q7L3S4 317 aaPredicted RBP15.26■□□□□ 0.03
CLN3-259ENST00000637551 SLC36A1Q7Z2H8 476 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 MYDGFQ969H8 173 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 CPNE2Q96FN4 548 aaPredicted RBP15.26■□□□□ 0.03
CLN3-259ENST00000637551 CDCA4Q9BXL8 241 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 BEX2Q9BXY8 128 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 RHOFQ9HBH0 211 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 CLN8Q9UBY8 286 aa15.26■□□□□ 0.03
CLN3-259ENST00000637551 TRBV2A0A0J9YWF9 115 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 IGHV3-64DA0A0J9YX35 117 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 SLC1A7O00341 560 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 CD2P06729 351 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 LIPFP07098 398 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 ZNF20P17024 532 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 GNB2P62879 340 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 SMIM21Q3B7S5 101 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 DCAF12L2Q5VW00 463 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 Q8IYB0 196 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 STX19Q8N4C7 294 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 POC1AQ8NBT0 407 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 GPR148Q8TDV2 347 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 DACT3Q96B18 629 aaPredicted RBP15.25■□□□□ 0.03
CLN3-259ENST00000637551 RASSF4Q9H2L5 321 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 PPP1R3EQ9H7J1 279 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 SEBOXQ9HB31 216 aaPredicted RBP15.25■□□□□ 0.03
CLN3-259ENST00000637551 ERGIC3Q9Y282 383 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 TPRKBQ9Y3C4 175 aa15.25■□□□□ 0.03
CLN3-259ENST00000637551 MYL12BO14950 172 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 PGA5P0DJD9 388 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 HAAOP46952 286 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 RBP2P50120 134 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 WNT4P56705 351 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 SLC35A2P78381 396 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 PAX2Q02962 417 aa15.24■□□□□ 0.03
CLN3-259ENST00000637551 WDR25Q64LD2 544 aaPredicted RBP15.24■□□□□ 0.03
CLN3-259ENST00000637551 STUMQ69YW2 141 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms