RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 THAP5Q7Z6K1 395 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 CD177Q8N6Q3 437 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 REEP6Q96HR9 211 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 AKR1E2Q96JD6 320 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 NKIRAS1Q9NYS0 192 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 DNAH10Q8IVF4 4471 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 HECTD4Q9Y4D8 3996 aa11.49□□□□□ -0.57
CLN3-249ENST00000636685 hCG_38984A0A1B0GV85 526 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 TMEM210A6NLX4 147 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 RENP00797 406 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 FRMD6-AS1P0C7T7 363 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 SLC6A1P30531 599 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 DCTDP32321 178 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 GSK3AP49840 483 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 IDH3AP50213 366 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 PRDX4Q13162 271 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 ZBTB46Q86UZ6 589 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 ZDHHC21Q8IVQ6 265 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 ZNF695Q8IW36 515 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 OR4K13Q8NH42 304 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 NDNFQ8TB73 568 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 DYDC1Q8WWB3 177 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 OR5P3Q8WZ94 311 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 RSRC1Q96IZ7 334 aaKnown RBP11.48□□□□□ -0.57
CLN3-249ENST00000636685 RNF170Q96K19 258 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 ERMAPQ96PL5 475 aaPredicted RBP11.48□□□□□ -0.57
CLN3-249ENST00000636685 KCNJ15Q99712 375 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 C1orf21Q9H246 121 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 ZFP57Q9NU63 452 aa11.48□□□□□ -0.57
CLN3-249ENST00000636685 ZNF850A8MQ14 1090 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 ANGPT2O15123 496 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 IFNA14P01570 189 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 IGHV1-8P0DP01 117 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 ZNF823P16415 610 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 OR3A4PP47883 348 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 TAF13Q15543 124 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 DEFB136Q30KP8 78 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 GFOD2Q3B7J2 385 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 FAM76BQ5HYJ3 339 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 MINOS1Q5TGZ0 78 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 LCN8Q6JVE9 175 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 RRM2BQ7LG56 351 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 DCXRQ7Z4W1 244 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 CALHM1Q8IU99 346 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 LINC00471Q8N535 108 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 OR5M8Q8NGP6 311 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 RABEP2Q9H5N1 569 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 CENPMQ9NSP4 180 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 TBC1D23Q9NUY8 699 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 KCNG2Q9UJ96 466 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 TMEM5Q9Y2B1 443 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 MINOS1-NBL1R4GNA1 71 aa11.47□□□□□ -0.57
CLN3-249ENST00000636685 TMEM120BA0PK00 339 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 OR6C68A6NDL8 312 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 TVP23AA6NH52 213 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 RFPL4AA6NLU0 287 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 RFPL4AL1F8VTS6 287 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 MTRF1O75570 445 aaKnown RBP11.46□□□□□ -0.57
CLN3-249ENST00000636685 OR2F2O95006 317 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 ANXA2P07355 339 aaKnown RBP11.46□□□□□ -0.57
CLN3-249ENST00000636685 HIST1H1CP16403 213 aaKnown RBP11.46□□□□□ -0.57
CLN3-249ENST00000636685 PLBD1Q6P4A8 553 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 LYPD4Q6UWN0 246 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 VTCN1Q7Z7D3 282 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 EGFL6Q8IUX8 553 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 CSNK2A3Q8NEV1 391 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 OR4C15Q8NGM1 316 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 HPSE2Q8WWQ2 592 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 NOL4LQ96MY1 436 aaPredicted RBP11.46□□□□□ -0.57
CLN3-249ENST00000636685 RBM14Q96PK6 669 aaKnown RBP11.46□□□□□ -0.57
CLN3-249ENST00000636685 CCDC28BQ9BUN5 200 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 MPC1Q9Y5U8 109 aa11.46□□□□□ -0.57
CLN3-249ENST00000636685 SLC22A2O15244 555 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 PYCR1P32322 319 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 KDELR2P33947 212 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 CX3CR1P49238 355 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 SELENOWP63302 87 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 ZNF260Q3ZCT1 412 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 NANOGP8Q6NSW7 305 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 LHFPL2Q6ZUX7 228 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 ZNF561Q8N587 486 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 CCDC197Q8NCU1 140 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 PIGCQ92535 297 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 STMN2Q93045 179 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 SLAMF6Q96DU3 332 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 CDRT15Q96T59 188 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 TMEM120AQ9BXJ8 343 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 ZNF319Q9P2F9 582 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 LYVE1Q9Y5Y7 322 aa11.45□□□□□ -0.58
CLN3-249ENST00000636685 UNC119BA6NIH7 251 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 SLC1A7O00341 560 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ZNF728P0DKX0 622 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ACKR3P25106 362 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 PRDX2P32119 198 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 VEGFCP49767 419 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 GPM6AP51674 278 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ACTA2P62736 377 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ACTG2P63267 376 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ACTC1P68032 377 aa11.44□□□□□ -0.58
CLN3-249ENST00000636685 ACTA1P68133 377 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms