RNA–Protein interactions for RNA: ENST00000618395.4

COL5A1-208, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL5A1, Length 8,437 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-208ENST00000618395 CALHM3Q86XJ0 350 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 CEP250Q9BV73 2442 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 PRAMEF26H0Y7S4 382 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 IL10RAQ13651 578 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 CDK5R1Q15078 307 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 SLC25A35Q3KQZ1 300 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 FCRL6Q6DN72 434 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 MAMSTRQ6ZN01 415 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 ONECUT2O95948 504 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 ST6GAL1P15907 406 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 CXCL3P19876 107 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 OR8B3Q8NGG8 313 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 ISG20L2Q9H9L3 353 aaKnown RBP13.59□□□□□ -0.23
COL5A1-208ENST00000618395 CMC2Q9NRP2 79 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 SLIT3O75094 1523 aa13.59□□□□□ -0.23
COL5A1-208ENST00000618395 GALR3O60755 368 aaPredicted RBP13.58□□□□□ -0.23
COL5A1-208ENST00000618395 HLA-GP17693 338 aa13.58□□□□□ -0.23
COL5A1-208ENST00000618395 CST5P28325 142 aaPredicted RBP13.58□□□□□ -0.23
COL5A1-208ENST00000618395 HOXA6P31267 233 aa13.58□□□□□ -0.23
COL5A1-208ENST00000618395 HRO43593 1189 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 LIPFP07098 398 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 PRF1P14222 555 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 CD40P25942 277 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 PDLIM5Q96HC4 596 aaKnown RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 POM121L2Q96KW2 1035 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 WDR92Q96MX6 357 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 MT-ATP6P00846 226 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 HOXB2P14652 356 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 SLC38A11Q08AI6 406 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 C16orf82Q7Z2V1 217 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 DOLPP1Q86YN1 238 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 MISPQ8IVT2 679 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 DNAJC4Q9NNZ3 241 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 FGF20Q9NP95 211 aaPredicted RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 KIAA1456Q9P272 454 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 MBLAC1A4D2B0 266 aaPredicted RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 DHRS7CA6NNS2 312 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 SH2D1BO14796 132 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 DCAF7P61962 342 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 ZNF345Q14585 488 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 JOSD1Q15040 202 aaPredicted RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 TMEM140Q9NV12 185 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 COL3A1P02461 1466 aaPredicted RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 POU3F2P20265 443 aaPredicted RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 CSNK1EP49674 416 aaKnown RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 OR2C3Q8N628 320 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 KLHDC7BQ96G42 594 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 HAPLN2Q9GZV7 340 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 ZNF749O43361 778 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 ABOP16442 354 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 SELENOPP49908 381 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 AGFG1P52594 562 aaKnown RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 MPV17LQ2QL34 196 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 TMEM99Q8N816 258 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 OR10X1Q8NGY0 326 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 MARVELD3Q96A59 401 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 R3HDM4Q96D70 268 aa13.58□□□□□ -0.24
COL5A1-208ENST00000618395 ZC3HAV1LQ96H79 300 aaKnown RBP13.58□□□□□ -0.24
COL5A1-208ENST00000618395 MED19A0JLT2 244 aaPredicted RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 SLC25A17O43808 307 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 EDDM3AQ14507 147 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 OR10G4Q8NGN3 311 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 OR10G9Q8NGN4 311 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 OR10G7Q8NGN6 311 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 SPPL3Q8TCT6 385 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 COPS9Q8WXC6 57 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 ATOH1Q92858 354 aaPredicted RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 CDC42EP3Q9UKI2 254 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 PEX10O60683 326 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 NPY5RQ15761 445 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 DLEU7Q6UYE1 221 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 ZNF729A6NN14 1252 aaPredicted RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 SMPD2O60906 423 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 IGF2P01344 180 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 SMAD2Q15796 467 aaKnown RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 TRAT1Q6PIZ9 186 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 PXDNQ92626 1479 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 NUFIP2Q7Z417 695 aaKnown RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 SPTBN1Q01082 2364 aaKnown RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 HIST1H1BP16401 226 aaKnown RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 PTGER1P34995 402 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 CLDN17P56750 224 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 USP53Q70EK8 1073 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 MRGPRGQ86SM5 289 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 OR10AD1Q8NGE0 317 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 RPS4Y2Q8TD47 263 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 TEX37Q96LM6 180 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 UFC1Q9Y3C8 167 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 HBQ1P09105 142 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 FGF9P31371 208 aaPredicted RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 DYNLT3P51808 116 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 DUSP3P51452 185 aaPredicted RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 KHDC3LQ587J8 217 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 CDX2Q99626 313 aaPredicted RBP13.57□□□□□ -0.24
COL5A1-208ENST00000618395 TAF1P21675 1872 aa13.57□□□□□ -0.24
COL5A1-208ENST00000618395 MRPL33O75394 65 aaKnown RBP13.56□□□□□ -0.24
COL5A1-208ENST00000618395 ZNF141Q15928 474 aa13.56□□□□□ -0.24
COL5A1-208ENST00000618395 SH2D2AQ9NP31 389 aa13.56□□□□□ -0.24
COL5A1-208ENST00000618395 MTFP1Q9UDX5 166 aa13.56□□□□□ -0.24
COL5A1-208ENST00000618395 POLEQ07864 2286 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms