RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LRFN1Q9P244 771 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 RCC2Q9P258 522 aaKnown RBP11.14□□□□□ -0.63
LIG1-221ENST00000613670 RARRES3Q9UL19 164 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 NSG2Q9Y328 171 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 OR5H15A6NDH6 313 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 H3BMH7 237 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 M0R135 149 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 MT-ND4LP03901 98 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 FHITP49789 147 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 RAB5CP51148 216 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 TMEM268Q5VZI3 342 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 PLCXD3Q63HM9 321 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 DHRS11Q6UWP2 260 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 LGI3Q8N145 548 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 HAS2Q92819 552 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 ZNF524Q96C55 264 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 ZNF799Q96GE5 643 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 NECAP2Q9NVZ3 263 aa11.14□□□□□ -0.63
LIG1-221ENST00000613670 TRBV23-1A0A0A0MS06 115 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 IGHV4-34P06331 123 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 OR5AC1P0C628 307 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 P2RY4P51582 365 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 PNLIPRP3Q17RR3 467 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 NKAIN1Q4KMZ8 207 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.13□□□□□ -0.63
LIG1-221ENST00000613670 OR10G3Q8NGC4 313 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 OR1J1Q8NGS3 322 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 MR1Q95460 341 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 SLC26A1Q9H2B4 701 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 MOB1AQ9H8S9 216 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 C19orf12Q9NSK7 152 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 DNAJB11Q9UBS4 358 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 C19orf25Q9UFG5 118 aaPredicted RBP11.13□□□□□ -0.63
LIG1-221ENST00000613670 SLCO1B1Q9Y6L6 691 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 FIGNL2A6NMB9 653 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 ZNF724A8MTY0 619 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 HTR5AP47898 357 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 GRB2P62993 217 aaKnown RBP11.13□□□□□ -0.63
LIG1-221ENST00000613670 NAAAQ02083 359 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 C9orf152Q5JTZ5 239 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 TMEM123Q8N131 208 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 GPR137CQ8N3F9 429 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 OR4A4PQ8NGN8 299 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 DYRK2Q92630 601 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 RNF126Q9BV68 326 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 FAM117AQ9C073 453 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 GHRLQ9UBU3 117 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 A0A1B0GTQ1 180 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 MS4A18H0YCH9 400 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 H3BP45 60 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 SCRG1O75711 98 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 WISP1O95388 367 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 ONECUT2O95948 504 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 IGHV3-9P01782 118 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 MS4A18Q3C1V0 323 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 RNF144BQ7Z419 303 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 PLPP5Q8NEB5 264 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 NOXO1Q8NFA2 376 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 AKR7LQ8NHP1 331 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 LIPHQ8WWY8 451 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 IL1F10Q8WWZ1 152 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 PLEKHA2Q9HB19 425 aa11.13□□□□□ -0.63
LIG1-221ENST00000613670 ANKUB1A6NFN9 424 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 CDRT15L2A8MXV6 281 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 NAT2P11245 290 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 MSR1P21757 451 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 PTX4Q96A99 478 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 IP6K3Q96PC2 410 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 PAPOLGQ9BWT3 736 aaKnown RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 OR51B6Q9H340 312 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 AK3Q9UIJ7 227 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 LRRK1Q38SD2 2015 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 C5orf42Q9H799 3197 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 ZFP92A6NM28 416 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 SSSCA1O60232 199 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 H2AFB1P0C5Y9 115 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 ALDH3B1P43353 468 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 HYAL1Q12794 435 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 PLAC9Q5JTB6 97 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 DHRS7BQ6IAN0 325 aaPredicted RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 OR6S1Q8NH40 331 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 ADIPOR1Q96A54 375 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 SGCZQ96LD1 299 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 ESRP2Q9H6T0 727 aaKnown RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 LANCL2Q9NS86 450 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 SVILO95425 2214 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 SERPINE3A8MV23 424 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 ADCYAP1P18509 176 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 NKX2-1P43699 371 aaPredicted RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 EFNA3P52797 238 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 MRPS34P82930 218 aaKnown RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 ECH1Q13011 328 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 FAM209BQ5JX69 171 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 TCEAL6Q6IPX3 200 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 LYZL2Q7Z4W2 148 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 PAQR4Q8N4S7 273 aaPredicted RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 C15orf54Q8N8G6 183 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 OR14L1PQ8NHC6 308 aa11.12□□□□□ -0.63
LIG1-221ENST00000613670 NAA11Q9BSU3 229 aaPredicted RBP11.12□□□□□ -0.63
LIG1-221ENST00000613670 PECRQ9BY49 303 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms