RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DMRTC1Q5HYR2 192 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 KCTD8Q6ZWB6 473 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 MOB3CQ70IA8 216 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 DHRSXQ8N5I4 330 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 SEH1LQ96EE3 360 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 ADI1Q9BV57 179 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 WDR13Q9H1Z4 485 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 ERVK-18Q9QC07 812 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 HSPE1-MOB4S4R3N1 261 aa13.4□□□□□ -0.26
TRIM28-213ENST00000598355 IGHV3OR15-7A0A075B7D8 119 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 KIR2DS1A0A191URI9 304 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 ANKRD61A6NGH8 418 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 OR4C45A6NMZ5 311 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 H0YAE9 185 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 J3QT63 122 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 NOS1APO75052 506 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-213ENST00000598355 LIMS3P0CW19 117 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 LIMS4P0CW20 117 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 ADRA2CP18825 462 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 EPHA1P21709 976 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 SCGB2A2Q13296 93 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 ODF4Q2M2E3 257 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 KLF17Q5JT82 389 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-213ENST00000598355 TMEM244Q5VVB8 128 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 POC1AQ8NBT0 407 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 SETD9Q8NE22 299 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 ANGPTL6Q8NI99 470 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 CNIH3Q8TBE1 160 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 NANPQ8TBE9 248 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 RPS4Y2Q8TD47 263 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 FBLIM1Q8WUP2 373 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 UPRTQ96BW1 309 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 MRPL48Q96GC5 212 aaKnown RBP13.39□□□□□ -0.27
TRIM28-213ENST00000598355 TECTBQ96PL2 329 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 MYCBPQ99417 103 aaPredicted RBP13.39□□□□□ -0.27
TRIM28-213ENST00000598355 PLEKHA1Q9HB21 404 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 GPR173Q9NS66 373 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 METRNQ9UJH8 293 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 ZNF222Q9UK12 451 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 AUP1Q9Y679 476 aa13.39□□□□□ -0.27
TRIM28-213ENST00000598355 A0A0A6YYJ9 748 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 A0A1B0GW55 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 AKR7A2O43488 359 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 ENSAO43768 121 aaKnown RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 HTR1AP08908 422 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 ACAA1P09110 424 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L2P0CJ85 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L3P0CJ86 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L4P0CJ87 422 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L5P0CJ88 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L6P0CJ89 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L7P0CJ90 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 PGA5P0DJD9 388 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 CAPGP40121 348 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 TGM4P49221 684 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 MRPL28Q13084 256 aaKnown RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 ALKBH1Q13686 389 aaKnown RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 UBE2V2Q15819 145 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 KLHL22Q53GT1 634 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 HAGHLQ6PII5 290 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4L9Q6RFH8 374 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 BTNL3Q6UXE8 466 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 ZNF788Q6ZQV5 615 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 USP43Q70EL4 1123 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 LHFPL3Q86UP9 236 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 ZNF573Q86YE8 665 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 HAVCR2Q8TDQ0 301 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 CYGBQ8WWM9 190 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 PP6455Q8WZ26 134 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 NUDT16L1Q9BRJ7 211 aaKnown RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 MRI1Q9BV20 369 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 ISG20L2Q9H9L3 353 aaKnown RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 DUX4Q9UBX2 424 aa13.38□□□□□ -0.27
TRIM28-213ENST00000598355 NKX1-2Q9UD57 310 aaPredicted RBP13.38□□□□□ -0.27
TRIM28-213ENST00000598355 STAB1Q9NY15 2570 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 A6NIN4 97 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 J3QLW9 94 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 DVL1O14640 695 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 TMPRSS2O15393 492 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 GATBO75879 557 aaKnown RBP13.37□□□□□ -0.27
TRIM28-213ENST00000598355 GNAO1P09471 354 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 MMP9P14780 707 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 ZNF19P17023 458 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 DCKP27707 260 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 HAAOP46952 286 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 CD276Q5ZPR3 534 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 LAIR2Q6ISS4 152 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 UTS2BQ765I0 119 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 SLC36A1Q7Z2H8 476 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 RDH10Q8IZV5 341 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 FAM216BQ8N7L0 139 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 ZNF671Q8TAW3 534 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 ADAT3Q96EY9 351 aaPredicted RBP13.37□□□□□ -0.27
TRIM28-213ENST00000598355 DMRTB1Q96MA1 342 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 GAFA1Q96PS6 74 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 NRIP2Q9BQI9 281 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 PKIBQ9C010 78 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 HES4Q9HCC6 221 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 NLKQ9UBE8 527 aa13.37□□□□□ -0.27
TRIM28-213ENST00000598355 DNHD1Q96M86 4753 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms