RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 SND1-IT1Q9HBX3 110 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 ZC4H2Q9NQZ6 224 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 TMEM100Q9NV29 134 aa2.4□□□□□ -2.03
SS18-214ENST00000580003 ZNF608Q9ULD9 1512 aaPredicted RBP2.4□□□□□ -2.03
SS18-214ENST00000580003 TACSTD2P09758 323 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 FUSP35637 526 aaKnown RBP eCLIP2.39□□□□□ -2.03
SS18-214ENST00000580003 GPR1P46091 355 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 NUDT2P50583 147 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 LRRC74AQ0VAA2 488 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 TPBGQ13641 420 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 TCF24Q7RTU0 167 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 Q8NDZ9 215 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 OR2M7Q8NG81 312 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 ITLN2Q8WWU7 325 aaPredicted RBP2.39□□□□□ -2.03
SS18-214ENST00000580003 BPIFA3Q9BQP9 254 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 CD209Q9NNX6 404 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 MRPS30Q9NP92 439 aaKnown RBP2.39□□□□□ -2.03
SS18-214ENST00000580003 NPHP4O75161 1426 aaPredicted RBP2.39□□□□□ -2.03
SS18-214ENST00000580003 MROH5Q6ZUA9 1318 aa2.39□□□□□ -2.03
SS18-214ENST00000580003 H3BQ85 93 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 IGHMP01871 453 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 PRPS1L1P21108 318 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 KRTAP25-1Q3LHN0 102 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 SPNS3Q6ZMD2 512 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 SPATA31E1Q6ZUB1 1445 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 ITPRIPQ8IWB1 547 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 CA5BP1Q8WTZ4 195 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 ISG20Q96AZ6 181 aaKnown RBP2.38□□□□□ -2.03
SS18-214ENST00000580003 PPIL1Q9Y3C6 166 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 ELP1O95163 1332 aa2.38□□□□□ -2.03
SS18-214ENST00000580003 ENTPD6O75354 484 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 TTC4O95801 387 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 CATP04040 527 aaKnown RBP2.37□□□□□ -2.03
SS18-214ENST00000580003 SEC11BP0C7V7 166 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 TUFMP49411 452 aaKnown RBP2.37□□□□□ -2.03
SS18-214ENST00000580003 FOXA1P55317 472 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 DNAJC3Q13217 504 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 CUL2Q13617 745 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 FAM57AQ8TBR7 257 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 ORAOV1Q8WV07 137 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 STMN4Q9H169 189 aaPredicted RBP2.37□□□□□ -2.03
SS18-214ENST00000580003 RDH14Q9HBH5 336 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 ADA2Q9NZK5 511 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 OR51B2Q9Y5P1 312 aa2.37□□□□□ -2.03
SS18-214ENST00000580003 TRAV8-6A0A0B4J262 113 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 A0A0B4J2E0 115 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 LRRIQ4A6NIV6 560 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 LCA5LO95447 670 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 CXorf1O96002 111 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 SLC35G6P0C7Q6 338 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 HLA-GP17693 338 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 MTPNP58546 118 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 C5orf64Q2M2E5 130 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 KRTAP13-4Q3LI77 160 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 TMEM144Q7Z5S9 345 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 MICU2Q8IYU8 434 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 EIF4E3Q8N5X7 224 aaKnown RBP2.36□□□□□ -2.03
SS18-214ENST00000580003 INO80EQ8NBZ0 244 aaPredicted RBP2.36□□□□□ -2.03
SS18-214ENST00000580003 DEFB129Q9H1M3 183 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 AUNIPQ9H7T9 357 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 ABCB9Q9NP78 766 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 TBC1D24Q9ULP9 559 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 ACOT9Q9Y305 439 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 TRAPPC1Q9Y5R8 145 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 BAZ1BQ9UIG0 1483 aaKnown RBP2.36□□□□□ -2.03
SS18-214ENST00000580003 SIGLEC1Q9BZZ2 1709 aa2.36□□□□□ -2.03
SS18-214ENST00000580003 IGLL5B9A064 214 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 SMC2O95347 1197 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 OR4Q2P0C623 313 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 CBR1P16152 277 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 RPL18AQ02543 176 aaKnown RBP2.35□□□□□ -2.03
SS18-214ENST00000580003 TSC22D1Q15714 1073 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 LGALSLQ3ZCW2 172 aaPredicted RBP2.35□□□□□ -2.03
SS18-214ENST00000580003 SLC7A5P1Q8MH63 180 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 KIF2BQ8N4N8 673 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 OR10Z1Q8NGY1 313 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 RNF170Q96K19 258 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 UBE2E2Q96LR5 201 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 ZNF75AQ96N20 296 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 ARV1Q9H2C2 271 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 CYP3A43Q9HB55 503 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 LYRM4Q9HD34 91 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 OTOGLQ3ZCN5 2332 aa2.35□□□□□ -2.03
SS18-214ENST00000580003 HSBP1O75506 76 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 CDK1P06493 297 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 ARL2P36404 184 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 PSMB2P49721 201 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 YWHAEP62258 255 aaKnown RBP2.34□□□□□ -2.03
SS18-214ENST00000580003 SLC35A1P78382 337 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 BEX3Q00994 111 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 THOC7Q6I9Y2 204 aaKnown RBP2.34□□□□□ -2.03
SS18-214ENST00000580003 CPNE9Q8IYJ1 553 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 DAW1Q8N136 415 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 ZDHHC22Q8N966 263 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 ING5Q8WYH8 240 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 CLSTN2Q9H4D0 955 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 CRCT1Q9UGL9 99 aa2.34□□□□□ -2.03
SS18-214ENST00000580003 RRP15Q9Y3B9 282 aaKnown RBP2.34□□□□□ -2.03
SS18-214ENST00000580003 BRCA1P38398 1863 aaKnown RBP2.33□□□□□ -2.04
SS18-214ENST00000580003 IGKV1OR2-108A0A075B7D4 117 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms