RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 CT45A8P0DMV1 189 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 CT45A9P0DMV2 189 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 GABRA1P14867 456 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 SLC37A1P57057 533 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 MESP2Q0VG99 397 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 CLPPQ16740 277 aaPredicted RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 CT45A2Q5DJT8 189 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 FAM199XQ6PEV8 388 aaPredicted RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 ADAM19Q9H013 955 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 ONECUT2O95948 504 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 FZD5Q13467 585 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 MRGPREQ86SM8 312 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 OR8B12Q8NGG6 310 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 OR10AC1Q8NH08 325 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 ZPLD1Q8TCW7 415 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 H1FXQ92522 213 aaKnown RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 RPUSD4Q96CM3 377 aaKnown RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 GPR137Q96N19 417 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 ZNF75AQ96N20 296 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 OPN4Q9UHM6 478 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 OR5H15A6NDH6 313 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 CST7O76096 145 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 WIPI1Q5MNZ9 446 aaPredicted RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 RFLNBQ8N5W9 214 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 LHX9Q9NQ69 397 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 DECR2Q9NUI1 292 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 MTCH1Q9NZJ7 389 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 DTX4Q9Y2E6 619 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 BGLAPP02818 100 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 ZNF774Q6NX45 483 aa13.66□□□□□ -0.22
CIITA-204ENST00000570546 PTPMT1Q8WUK0 201 aaPredicted RBP13.66□□□□□ -0.22
CIITA-204ENST00000570546 SCN4AP35499 1836 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 F6UZH7 168 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 ASCL1P50553 236 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 NXPH1P58417 271 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 ZXDCQ2QGD7 858 aaPredicted RBP13.65□□□□□ -0.22
CIITA-204ENST00000570546 GGNBP1Q5YKI7 109 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 RPS4Y2Q8TD47 263 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 SLC39A7Q92504 469 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 TRIB1Q96RU8 372 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 TGIF2Q9GZN2 237 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 OPA3Q9H6K4 179 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 C7orf66A4D0T2 115 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 C5orf67F2Z3F1 127 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 TXNDC12O95881 172 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 MBP02144 154 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 ZNF468Q5VIY5 522 aaPredicted RBP13.65□□□□□ -0.22
CIITA-204ENST00000570546 PECRQ9BY49 303 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 ZIC2O95409 532 aaPredicted RBP13.65□□□□□ -0.22
CIITA-204ENST00000570546 IGKV1D-16P01601 117 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 KCNJ3P48549 501 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 DVL1P1P54792 670 aaPredicted RBP13.65□□□□□ -0.22
CIITA-204ENST00000570546 INPP5JQ15735 1006 aaPredicted RBP13.65□□□□□ -0.22
CIITA-204ENST00000570546 ACOT6Q3I5F7 207 aaPredicted RBP13.65□□□□□ -0.22
CIITA-204ENST00000570546 SKA3Q8IX90 412 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 BVESQ8NE79 360 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 TMED3Q9Y3Q3 217 aa13.65□□□□□ -0.22
CIITA-204ENST00000570546 H3BMH7 237 aa13.65□□□□□ -0.23
CIITA-204ENST00000570546 H3BP45 60 aa13.65□□□□□ -0.23
CIITA-204ENST00000570546 TGOLN2O43493 480 aa13.65□□□□□ -0.23
CIITA-204ENST00000570546 B3GALNT1O75752 331 aa13.65□□□□□ -0.23
CIITA-204ENST00000570546 TMIGD3P0DMS9 266 aaPredicted RBP13.65□□□□□ -0.23
CIITA-204ENST00000570546 FAM109BQ6ICB4 259 aaPredicted RBP13.65□□□□□ -0.23
CIITA-204ENST00000570546 ZNF705AQ6ZN79 300 aaPredicted RBP13.65□□□□□ -0.23
CIITA-204ENST00000570546 SMIM7Q9BQ49 75 aa13.65□□□□□ -0.23
CIITA-204ENST00000570546 NGBQ9NPG2 151 aa13.65□□□□□ -0.23
CIITA-204ENST00000570546 ZNF250P15622 560 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 IP6K3Q96PC2 410 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 NAA60Q9H7X0 242 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 ZNF391Q9UJN7 358 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 S100A7AQ86SG5 101 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 OR1J1Q8NGS3 322 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 OR6X1Q8NH79 312 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 OR51I2Q9H344 312 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 FAM96BQ9Y3D0 163 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 GSK3AP49840 483 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 ZADH2Q8N4Q0 377 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 ASB5Q8WWX0 329 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 NTNG2Q96CW9 530 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 PIK3IP1Q96FE7 263 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 CABLES2Q9BTV7 478 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 NMES1Q9C002 83 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 COX5AP20674 150 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 NANOS3P60323 173 aaKnown RBP13.64□□□□□ -0.23
CIITA-204ENST00000570546 DGAT2L6Q6ZPD8 337 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 OR13D1Q8NGV5 346 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 ERGIC1Q969X5 290 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 CLDN23Q96B33 292 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 CIB3Q96Q77 187 aaPredicted RBP13.64□□□□□ -0.23
CIITA-204ENST00000570546 CA10Q9NS85 328 aa13.64□□□□□ -0.23
CIITA-204ENST00000570546 MYO7AQ13402 2215 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 LIPT2A6NK58 231 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 LRRC30A6NM36 301 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 ADAP1O75689 374 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 IGF2P01344 180 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 CD1AP06126 327 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 DTYMKP23919 212 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 HOXD11P31277 338 aaPredicted RBP13.63□□□□□ -0.23
CIITA-204ENST00000570546 EFNB2P52799 333 aa13.63□□□□□ -0.23
CIITA-204ENST00000570546 KLHDC2Q9Y2U9 406 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms