RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 LINC00862A6NCI5 91 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 ARGFXA6NJG6 315 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 RFPL4AA6NLU0 287 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 SERPINE3A8MV23 424 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 LEUTXA8MZ59 168 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 RFPL4AL1F8VTS6 287 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 AKR1C4P17516 323 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 C4BPBP20851 252 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 PRKACBP22694 351 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 S100A11P31949 105 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 SNU13P55769 128 aaKnown RBP17.59■□□□□ 0.41
CLN3-230ENST00000568076 HLXQ14774 488 aaPredicted RBP17.59■□□□□ 0.41
CLN3-230ENST00000568076 OR8B8Q15620 311 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 TMUB2Q71RG4 321 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 PNPLA5Q7Z6Z6 429 aaPredicted RBP17.59■□□□□ 0.41
CLN3-230ENST00000568076 METTL9Q9H1A3 318 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 ZNF581Q9P0T4 197 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 FREM1Q5H8C1 2179 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 ZNF407Q9C0G0 2248 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 ZNF503-AS2A6NEH8 195 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 CEACAM18A8MTB9 384 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 KLRC4-KLRK1H3BQV0 150 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 ZNHIT1O43257 154 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 SNAPC5O75971 98 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 CD8AP01732 235 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 OR3A3P47888 321 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 NPY4RP50391 375 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 SIGIRRQ6IA17 410 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 ZFP62Q8NB50 900 aaPredicted RBP17.59■□□□□ 0.41
CLN3-230ENST00000568076 OR5H2Q8NGV7 314 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 SPSB4Q96A44 273 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 BORCS8Q96FH0 119 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 PRDM14Q9GZV8 571 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 PARD6AQ9NPB6 346 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 GPR132Q9UNW8 380 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 MAB21L2Q9Y586 359 aa17.59■□□□□ 0.41
CLN3-230ENST00000568076 IGKV1-12A0A0C4DH73 117 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 FIGNL2A6NMB9 653 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 ZNF724A8MTY0 619 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 MSTNO14793 375 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 HTR3BO95264 441 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 IGKV1D-12P01611 117 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 ZNF24P17028 368 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 HLA-GP17693 338 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 VAMP1P23763 118 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 RBP2P50120 134 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 LPCAT3Q6P1A2 487 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 ASCL4Q6XD76 172 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 COLCA1Q6ZS62 124 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 GLRX5Q86SX6 157 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 LHFPL1Q86WI0 220 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 OR13G1Q8NGZ3 307 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 CASTOR1Q8WTX7 329 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 TMEM230Q96A57 120 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 PRRG4Q9BZD6 226 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 C5orf66Q9H5L9 145 aa17.58■□□□□ 0.4
CLN3-230ENST00000568076 SDCBPO00560 298 aaPredicted RBP17.57■□□□□ 0.4
CLN3-230ENST00000568076 HLA-HP01893 362 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 GMFBP60983 142 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 RSU1Q15404 277 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 CLLU1Q5K131 121 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 C3P1Q6ZMU1 363 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 LHFPL2Q6ZUX7 228 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 CSNK2A3Q8NEV1 391 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 ARL6Q9H0F7 186 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 RNF122Q9H9V4 155 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 AUP1Q9Y679 476 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 IGKV1D-8A0A087WSZ0 117 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 XRCC2O43543 280 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 CA11O75493 328 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 SLC10A1Q14973 349 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 STK11Q15831 433 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 RNFT1Q5M7Z0 435 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 NKAPLQ5M9Q1 402 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 AADACL3Q5VUY0 350 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 NUFIP2Q7Z417 695 aaKnown RBP17.57■□□□□ 0.4
CLN3-230ENST00000568076 SEC22AQ96IW7 307 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 PHB2Q99623 299 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 HDHD3Q9BSH5 251 aaPredicted RBP17.57■□□□□ 0.4
CLN3-230ENST00000568076 ACKR4Q9NPB9 350 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 PLEKHJ1Q9NW61 149 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 ATPIF1Q9UII2 106 aa17.57■□□□□ 0.4
CLN3-230ENST00000568076 CACNA1HO95180 2353 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 OR5H14A6NHG9 310 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 DUS4LO95620 317 aaKnown RBP17.56■□□□□ 0.4
CLN3-230ENST00000568076 CD46P15529 392 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 TAF9Q16594 264 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 PEG10Q86TG7 708 aaKnown RBP17.56■□□□□ 0.4
CLN3-230ENST00000568076 DEFB124Q8NES8 71 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 APH1AQ96BI3 265 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 CPNE2Q96FN4 548 aaPredicted RBP17.56■□□□□ 0.4
CLN3-230ENST00000568076 DEFB127Q9H1M4 99 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 OSGIN2Q9Y236 505 aa17.56■□□□□ 0.4
CLN3-230ENST00000568076 DNAJC13O75165 2243 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 ZNF816-ZNF321PA0A0X1KG74 233 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 CSTBP04080 98 aaKnown RBP17.55■□□□□ 0.4
CLN3-230ENST00000568076 SERPINA5P05154 406 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 CCL2P13500 99 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 RPA2P15927 270 aa17.55■□□□□ 0.4
CLN3-230ENST00000568076 ARL6IP1Q15041 203 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms