RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ROM1Q03395 351 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 ZBTB37Q5TC79 503 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 KCTD18Q6PI47 426 aaPredicted RBP13.97□□□□□ -0.17
CLN3-216ENST00000565316 KRT77Q7Z794 578 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 HS3ST5Q8IZT8 346 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 ZNRF1Q8ND25 227 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 OR5D13Q8NGL4 314 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 ZNF671Q8TAW3 534 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 FAM81AQ8TBF8 368 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 TEAD3Q99594 435 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 RASL12Q9NYN1 266 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 FBLN5Q9UBX5 448 aa13.97□□□□□ -0.17
CLN3-216ENST00000565316 SF3B6Q9Y3B4 125 aaKnown RBP13.97□□□□□ -0.17
CLN3-216ENST00000565316 TMEM269A0A1B0GVZ9 245 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 CCDC182A6NF36 153 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 PRR32B1ATL7 298 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 ZNF254O75437 659 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 MTRF1O75570 445 aaKnown RBP13.96□□□□□ -0.17
CLN3-216ENST00000565316 TSPAN15O95858 294 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 PRKACGP22612 351 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 GABRA2P47869 451 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 RPS7P62081 194 aaKnown RBP13.96□□□□□ -0.17
CLN3-216ENST00000565316 RIPPLY1Q0D2K3 151 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 APOFQ13790 326 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 BLMHQ13867 455 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 CEP78Q5JTW2 689 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 TMEM236Q5W0B7 351 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 SLC35E4Q6ICL7 350 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 TEX12Q9BXU0 123 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 PBOV1Q9GZY1 135 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 YY1AP1Q9H869 796 aa13.96□□□□□ -0.17
CLN3-216ENST00000565316 ELL3Q9HB65 397 aaPredicted RBP13.96□□□□□ -0.17
CLN3-216ENST00000565316 E2F6O75461 281 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 FAM107AO95990 144 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 EGR3Q06889 387 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 AANATQ16613 207 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 C2orf68Q2NKX9 166 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 ZNF679Q8IYX0 411 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 CCDC197Q8NCU1 140 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 TMEM185AQ8NFB2 350 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 OR51E1Q8TCB6 317 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 C17orf50Q8WW18 174 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 ASB17Q8WXJ9 295 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 THTPAQ9BU02 230 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 MROQ9BYG7 248 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 MEGF9Q9H1U4 602 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 GPR84Q9NQS5 396 aa13.95□□□□□ -0.18
CLN3-216ENST00000565316 NUFIP1Q9UHK0 495 aaKnown RBP13.95□□□□□ -0.18
CLN3-216ENST00000565316 H0YAE9 185 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 PSMD9O00233 223 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 SNAPC1Q16533 368 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 HAGHLQ6PII5 290 aaPredicted RBP13.94□□□□□ -0.18
CLN3-216ENST00000565316 CRIP3Q6Q6R5 217 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 ACP7Q6ZNF0 438 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 MOB3CQ70IA8 216 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 THAP5Q7Z6K1 395 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 C11orf42Q8N5U0 333 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 POC1AQ8NBT0 407 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 OR5K1Q8NHB7 308 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 OR8B4Q96RC9 309 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 PPA2Q9H2U2 334 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 C19orf12Q9NSK7 152 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 DNAJB9Q9UBS3 223 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 COPS3Q9UNS2 423 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 PIGLQ9Y2B2 252 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 TMEM14AQ9Y6G1 99 aa13.94□□□□□ -0.18
CLN3-216ENST00000565316 A0A0G2JK05 382 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 ANKRD61A6NGH8 418 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 H3BUX3 64 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 GSC2O15499 205 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 NOS1APO75052 506 aaPredicted RBP13.93□□□□□ -0.18
CLN3-216ENST00000565316 SRSF10O75494 262 aaKnown RBP13.93□□□□□ -0.18
CLN3-216ENST00000565316 FAHP16930 419 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 GABRA5P31644 462 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 CRISP1P54107 249 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 SMIM21Q3B7S5 101 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 ZNF829Q3KNS6 432 aaPredicted RBP13.93□□□□□ -0.18
CLN3-216ENST00000565316 DMRTC1Q5HYR2 192 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 PLCXD3Q63HM9 321 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 TMEM42Q69YG0 159 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 FAM185AQ8N0U4 392 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 CD177Q8N6Q3 437 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 PPP1R35Q8TAP8 253 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 DNAJC9Q8WXX5 260 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 PPP1R14AQ96A00 147 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 SSX3Q99909 188 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 FAM234AQ9H0X4 552 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 TVP23BQ9NYZ1 205 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 ENPP5Q9UJA9 477 aa13.93□□□□□ -0.18
CLN3-216ENST00000565316 TCRBV3S1A0A5B6 114 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 RFPL4AA6NLU0 287 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 RFPL4AL1F8VTS6 287 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 ANGPTL7O43827 346 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 FKBP6O75344 327 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 DHRS3O75911 302 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 NRASP01111 189 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 MRPL3P09001 348 aaKnown RBP13.92□□□□□ -0.18
CLN3-216ENST00000565316 PGA5P0DJD9 388 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 PRDX2P32119 198 aa13.92□□□□□ -0.18
CLN3-216ENST00000565316 KIR2DS4P43632 304 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms