RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 GAFA1Q96PS6 74 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 ENPP5Q9UJA9 477 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 FAM96BQ9Y3D0 163 aa18.5■□□□□ 0.55
CLN3-215ENST00000565236 A0A0U1RQK1 487 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 A0A1B0GUS0 222 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 ZNF670-ZNF695F2Z2N8 137 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 LOC110117498-PIK3R3F6TDL0 507 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 SIGLEC5O15389 551 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 IGLV3-1P01715 115 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 TFF1P04155 84 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 NDUFB7P17568 137 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 MFGE8Q08431 387 aaPredicted RBP18.49■□□□□ 0.55
CLN3-215ENST00000565236 DGUOKQ16854 277 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 C12orf73Q69YU5 71 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 OR4F5Q8NH21 305 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 C8orf46Q8TAG6 207 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 SLITRK2Q9H156 845 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 ZNF696Q9H7X3 374 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 BEX1Q9HBH7 125 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 ADGRL4Q9HBW9 690 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 SIRT7Q9NRC8 400 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 CLN6Q9NWW5 311 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 MMP24Q9Y5R2 645 aa18.49■□□□□ 0.55
CLN3-215ENST00000565236 MAGEB4O15481 346 aaPredicted RBP18.48■□□□□ 0.55
CLN3-215ENST00000565236 DHRS3O75911 302 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 NRASP01111 189 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 TTRP02766 147 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 FCGR1AP12314 374 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 RAG2P55895 527 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 PRR31Q5SQ13 230 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 ZNF684Q5T5D7 378 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 BCL2L15Q5TBC7 163 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 HAGHLQ6PII5 290 aaPredicted RBP18.48■□□□□ 0.55
CLN3-215ENST00000565236 METAP1DQ6UB28 335 aaPredicted RBP18.48■□□□□ 0.55
CLN3-215ENST00000565236 GID4Q8IVV7 300 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 PIP4P2Q8N4L2 257 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 AQP3Q92482 292 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 GABARAPL1Q9H0R8 117 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 MOB1AQ9H8S9 216 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 CAB39Q9Y376 341 aaPredicted RBP18.48■□□□□ 0.55
CLN3-215ENST00000565236 R4GMQ9 66 aa18.48■□□□□ 0.55
CLN3-215ENST00000565236 IGKV1D-17A0A075B6S4 117 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 SRSF10O75494 262 aaKnown RBP18.47■□□□□ 0.55
CLN3-215ENST00000565236 PSG2P11465 335 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 EEF1B2P24534 225 aaKnown RBP18.47■□□□□ 0.55
CLN3-215ENST00000565236 CAV3P56539 151 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 GUCA2AQ02747 115 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 C1orf122Q6ZSJ8 110 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 ELMOD2Q8IZ81 293 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 Q8N7P7 452 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 NPRL2Q8WTW4 380 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 LRTOMTQ8WZ04 291 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 DYRK2Q92630 601 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 DUS3LQ96G46 650 aaKnown RBP18.47■□□□□ 0.55
CLN3-215ENST00000565236 RASL12Q9NYN1 266 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 C1RLQ9NZP8 487 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 OR52A1Q9UKL2 312 aa18.47■□□□□ 0.55
CLN3-215ENST00000565236 A0A1W2PQ09 198 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 KNG1P01042 644 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 IGHV4-59P01825 116 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 IER3P46695 156 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 EGR3Q06889 387 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 CLVS2Q5SYC1 327 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 LDLRAD3Q86YD5 345 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 ZNRF1Q8ND25 227 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 OR51G2Q8NGK0 314 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 CIB1Q99828 191 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 DPAGT1Q9H3H5 408 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 MRM2Q9UI43 246 aaKnown RBP18.46■□□□□ 0.55
CLN3-215ENST00000565236 SNX5Q9Y5X3 404 aa18.46■□□□□ 0.55
CLN3-215ENST00000565236 TRRAPQ9Y4A5 3859 aa18.46■□□□□ 0.54
CLN3-215ENST00000565236 RNASEK-C17orf49H0YIS7 233 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 NDUFA7O95182 113 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 FBP1P09467 338 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 RPL15P61313 204 aaKnown RBP18.45■□□□□ 0.54
CLN3-215ENST00000565236 PRB3Q04118 309 aaPredicted RBP18.45■□□□□ 0.54
CLN3-215ENST00000565236 BLMHQ13867 455 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 PLEKHG7Q6ZR37 379 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 ZNF573Q86YE8 665 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 TMEM185AQ8NFB2 350 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 SEMA6AQ9H2E6 1030 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 WARS2Q9UGM6 360 aaKnown RBP18.45■□□□□ 0.54
CLN3-215ENST00000565236 MAB21L2Q9Y586 359 aa18.45■□□□□ 0.54
CLN3-215ENST00000565236 A0A1W2PRD5 423 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 A0A1W2PRF3 423 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 A0A1W2PRM7 423 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 M0R1W7 72 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 DLGAP1O14490 977 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 GPR137BO60478 399 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 KRT8P05787 483 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 HAAOP46952 286 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 CAPZA1P52907 286 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 RELBQ01201 579 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 C17orf107Q6ZR85 190 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 YIPF7Q8N8F6 280 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 TBX5Q99593 518 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 METTL8Q9H825 291 aaKnown RBP18.44■□□□□ 0.54
CLN3-215ENST00000565236 GPR173Q9NS66 373 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 ZNF222Q9UK12 451 aa18.44■□□□□ 0.54
CLN3-215ENST00000565236 V9GYS6 101 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms