RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CHN2P52757 468 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 SEC61A1P61619 476 aaKnown RBP8.21□□□□□ -1.1
CLK3-208ENST00000562626 BDH1Q02338 343 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 TPBGQ13641 420 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 ZNF529Q6P280 563 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 HAGHLQ6PII5 290 aaPredicted RBP8.21□□□□□ -1.1
CLK3-208ENST00000562626 ZNF773Q6PK81 442 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 KCTD8Q6ZWB6 473 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 PARP16Q8N5Y8 322 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 BOLLQ8N9W6 283 aaKnown RBP8.21□□□□□ -1.1
CLK3-208ENST00000562626 OR5A2Q8NGI9 324 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 CLDND2Q8NHS1 167 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 LRRC29Q8WV35 223 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 RFT1Q96AA3 541 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 COX4I2Q96KJ9 171 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 MYCBPQ99417 103 aaPredicted RBP8.21□□□□□ -1.1
CLK3-208ENST00000562626 MGLLQ99685 303 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 MICU1Q9BPX6 476 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 TMED9Q9BVK6 235 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 YTHDF1Q9BYJ9 559 aaKnown RBP8.21□□□□□ -1.1
CLK3-208ENST00000562626 WDR13Q9H1Z4 485 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 DHDHQ9UQ10 334 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 LRCH1Q9Y2L9 728 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 NPTNQ9Y639 398 aa8.21□□□□□ -1.1
CLK3-208ENST00000562626 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 A0A1B0GW55 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 hCG_1807616A0A1W2PRN6 198 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 OR5B21A6NL26 309 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 FAM157AC9JC47 383 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 NDUFS8O00217 210 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 AKR7A2O43488 359 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 SC5DO75845 299 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 PLATP00750 562 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 RPSAP08865 295 aaKnown RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 OCM2P0CE71 109 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L2P0CJ85 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L3P0CJ86 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L4P0CJ87 422 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L5P0CJ88 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L6P0CJ89 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L7P0CJ90 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 SMIM18P0DKX4 95 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 SLC25A16P16260 332 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 CPEP16870 476 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 ZNF20P17024 532 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 IGFBP3P17936 291 aaPredicted RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 AMY2BP19961 511 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 AZGP1P25311 298 aaKnown RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 TMEM33P57088 247 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DSCR9P59020 149 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 TAS2R43P59537 309 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 GMFBP60983 142 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 LMO4P61968 165 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 GNG3P63215 75 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 MLLT11Q13015 90 aaPredicted RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 ZNF181Q2M3W8 571 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 YIF1BQ5BJH7 314 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 ARMCX4Q5H9R4 360 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 UBE2UQ5VVX9 321 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 SFRP4Q6FHJ7 346 aaPredicted RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4L9Q6RFH8 374 aaPredicted RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 LYPD2Q6UXB3 125 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 UNQ9370/PRO34162Q6UXP9 181 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 TMEM91Q6ZNR0 172 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 UTS2BQ765I0 119 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 ZNF367Q7RTV3 350 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 PHC2Q8IXK0 858 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 FGFRL1Q8N441 504 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 FTMTQ8N4E7 242 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 SPERTQ8NA61 448 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 CCDC54Q8NEL0 328 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 HAVCR2Q8TDQ0 301 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 GPR148Q8TDV2 347 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 PP6455Q8WZ26 134 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 AQP3Q92482 292 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 TMEM203Q969S6 136 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 TMEM106AQ96A25 262 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DERL3Q96Q80 235 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 GSX1Q9H4S2 264 aaPredicted RBP8.2□□□□□ -1.1
CLK3-208ENST00000562626 ZCCHC4Q9H5U6 513 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 FN3KRPQ9HA64 309 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 TMEM165Q9HC07 324 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 C14orf119Q9NWQ9 140 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 RNF7Q9UBF6 113 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 DUX4Q9UBX2 424 aa8.2□□□□□ -1.1
CLK3-208ENST00000562626 IGKV1-12A0A0C4DH73 117 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 ISPDA4D126 451 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 TMEM210A6NLX4 147 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 SRRM5B3KS81 715 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 ZNF879B4DU55 563 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 TNFRSF13BO14836 293 aaPredicted RBP8.19□□□□□ -1.1
CLK3-208ENST00000562626 SPRY1O43609 319 aaPredicted RBP8.19□□□□□ -1.1
CLK3-208ENST00000562626 MRPS14O60783 128 aaKnown RBP8.19□□□□□ -1.1
CLK3-208ENST00000562626 IGKV1D-12P01611 117 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 CD1AP06126 327 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 ZNF12P17014 697 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 USF1P22415 310 aaPredicted RBP8.19□□□□□ -1.1
CLK3-208ENST00000562626 MPZP25189 248 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 HAAOP46952 286 aa8.19□□□□□ -1.1
CLK3-208ENST00000562626 BTG1P62324 171 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms