RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.24□□□□□ -0.93
CUX1-217ENST00000558836 PP6455Q8WZ26 134 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 PIGCQ92535 297 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 ALX4Q9H161 411 aaPredicted RBP9.24□□□□□ -0.93
CUX1-217ENST00000558836 OR51B6Q9H340 312 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 C12orf49Q9H741 205 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 C13orf42A0A1B0GVH6 325 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 SPAARA0A1B0GVQ0 90 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 LEUTXA8MZ59 168 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 C21orf140B9A014 251 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 EEF1E1-BLOC1S5C9J1V9 151 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 AMY2BP19961 511 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 SNU13P55769 128 aaKnown RBP9.24□□□□□ -0.93
CUX1-217ENST00000558836 RIPPLY1Q0D2K3 151 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 LOXL4Q96JB6 756 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 PLEKHJ1Q9NW61 149 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 FBLN5Q9UBX5 448 aa9.24□□□□□ -0.93
CUX1-217ENST00000558836 MCTS1Q9ULC4 181 aaKnown RBP9.24□□□□□ -0.93
CUX1-217ENST00000558836 TRAV14DV4A0A0A6YYC5 116 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 C9orf170A2RU37 121 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 OR6C6A6NF89 314 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 ZNF806P0C7X5 589 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 ZBTB25P24278 435 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 MEOX1P50221 254 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 GK2Q14410 553 aaPredicted RBP9.23□□□□□ -0.93
CUX1-217ENST00000558836 SLC9A3R2Q15599 337 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 TMUB2Q71RG4 321 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 CDH26Q8IXH8 852 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 CSNK2A3Q8NEV1 391 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 FAAP24Q9BTP7 215 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 PECRQ9BY49 303 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 B4GALT7Q9UBV7 327 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 ZNF629Q9UEG4 869 aaPredicted RBP9.23□□□□□ -0.93
CUX1-217ENST00000558836 KCNN3Q9UGI6 736 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 UBQLN2Q9UHD9 624 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 C3orf80F5H4A9 247 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 EFSO43281 561 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 IFNA7P01567 189 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 EDN3P14138 238 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 PPIAP62937 165 aaKnown RBP9.23□□□□□ -0.93
CUX1-217ENST00000558836 FAM3AP98173 230 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 PMP22Q01453 160 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 HLXQ14774 488 aaPredicted RBP9.23□□□□□ -0.93
CUX1-217ENST00000558836 PIGYQ3MUY2 71 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 SLC25A42Q86VD7 318 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 DEFB124Q8NES8 71 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 ABI3Q9P2A4 366 aa9.23□□□□□ -0.93
CUX1-217ENST00000558836 RPS10-NUDT3A0A1W2PQS6 291 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 OR5H14A6NHG9 310 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 WISP2O76076 250 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 SPDEFO95238 335 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 NRASP01111 189 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 APOC1P02654 83 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 CSTBP04080 98 aaKnown RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 GSTP1P09211 210 aaKnown RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 CD79AP11912 226 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 BTF3P20290 206 aaKnown RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 S100A11P31949 105 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 OPRM1P35372 400 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 OR3A2P47893 321 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 GSK3AP49840 483 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 AIMP2Q13155 320 aaKnown RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 RSU1Q15404 277 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 RNFT1Q5M7Z0 435 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 C3P1Q6ZMU1 363 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 LYG2Q86SG7 212 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 OR5H2Q8NGV7 314 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 TERB2Q8NHR7 220 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 COQ8AQ8NI60 647 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 TMPRSS13Q9BYE2 586 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 MFFQ9GZY8 342 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 C5orf66Q9H5L9 145 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 B3GNT2Q9NY97 397 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 EHFQ9NZC4 300 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 CRIM1Q9NZV1 1036 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 IGKV1-12A0A0C4DH73 117 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 C5orf49A4QMS7 147 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 SCGNO76038 276 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 FARS2O95363 451 aaKnown RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 IGKV1D-12P01611 117 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 SERPINA5P05154 406 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 SP1P08047 785 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 MMP7P09237 267 aaPredicted RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 GLRA1P23415 457 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 ATP1B3P54709 279 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 MOB3CQ70IA8 216 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 NUFIP2Q7Z417 695 aaKnown RBP9.22□□□□□ -0.93
CUX1-217ENST00000558836 ZNF546Q86UE3 836 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 MED12LQ86YW9 2145 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 FAM89BQ8N5H3 189 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 BHLHE23Q8NDY6 225 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 PPP1R1CQ8WVI7 109 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 BORCS8Q96FH0 119 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 LDAHQ9H6V9 325 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 SLC2A8Q9NY64 477 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 RDH8Q9NYR8 311 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 MAB21L2Q9Y586 359 aa9.22□□□□□ -0.93
CUX1-217ENST00000558836 DHRS7CA6NNS2 312 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 MPTX1A8MV57 137 aa9.21□□□□□ -0.93
CUX1-217ENST00000558836 GEMIN2O14893 280 aaKnown RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms