RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 TMEM231Q9H6L2 316 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PNRC2Q9NPJ4 139 aaKnown RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 NPDC1Q9NQX5 325 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PTTG3PQ9NZH4 202 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PRSS50Q9UI38 385 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 DMXL2Q8TDJ6 3036 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 TMEM265A0A087WTH1 108 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 A0A0A6YYH2 397 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 A6NJ64 397 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 FARS2O95363 451 aaKnown RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 SYNGR4O95473 234 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 CD63P08962 238 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 S100A11P31949 105 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 RAC3P60763 192 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 DEFA5Q01523 94 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 DCAF10Q5QP82 559 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 FAM166AQ6J272 317 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 FDX2Q6P4F2 183 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 NUFIP2Q7Z417 695 aaKnown RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 P4HA3Q7Z4N8 544 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 NAXDQ8IW45 347 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 FAM109AQ8N4B1 249 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 OR56B2PQ8NGI1 322 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 THAP6Q8TBB0 222 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 M1APQ8TC57 530 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 IL1F10Q8WWZ1 152 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PNPLA2Q96AD5 504 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 DMRTA2Q96SC8 542 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 CDC6Q99741 560 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 CMSS1Q9BQ75 279 aaKnown RBP4.88□□□□□ -1.63
LIMA1-215ENST00000552823 MRI1Q9BV20 369 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 WDR13Q9H1Z4 485 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 PPA2Q9H2U2 334 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 HEXA-AS1Q9H8Q6 139 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 WDR54Q9H977 334 aa4.88□□□□□ -1.63
LIMA1-215ENST00000552823 DHRS7CA6NNS2 312 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 CDX4O14627 284 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 XRCC2O43543 280 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 DIRAS3O95661 229 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 NRASP01111 189 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 IGHMP01871 453 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 TFF1P04155 84 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 SERPINA7P05543 415 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 ZNF735P0CB33 412 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 HIST1H1DP16402 221 aaKnown RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 SRD5A2P31213 254 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 MEOX1P50221 254 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 IDH3GP51553 393 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GPM6AP51674 278 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GRB2P62993 217 aaKnown RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 SSPNQ14714 243 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 ALKBH6Q3KRA9 238 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 C1orf100Q5SVJ3 147 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 OR2T2Q6IF00 324 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 DEGS2Q6QHC5 323 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GSG1LQ6UXU4 331 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 PIP4P2Q8N4L2 257 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 TMEM251Q8N6I4 163 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 NKAIN3Q8N8D7 197 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 TMEM229BQ8NBD8 167 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 CPEB3Q8NE35 698 aaKnown RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 OR5L1Q8NGL2 311 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 C15orf40Q8WUR7 153 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 SLAMF9Q96A28 289 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 FOXRED1Q96CU9 486 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GSX2Q9BZM3 304 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 SLC26A1Q9H2B4 701 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 MCTS1Q9ULC4 181 aaKnown RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 AKAP13Q12802 2813 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 PTPRQQ9UMZ3 2332 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 LOC102723996A0A087X1L8 192 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 A0A1W2PNV4 684 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 C9orf170A2RU37 121 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 DHRS3O75911 302 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 LYZL6O75951 148 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 HPNP05981 417 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GIPP09681 153 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 CD59P13987 128 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GABRA1P14867 456 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 HAAOP46952 286 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 P2RX3P56373 397 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 RAB1AP62820 205 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 RIPPLY1Q0D2K3 151 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 BTN1A1Q13410 526 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 PXDC1Q5TGL8 231 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 RAB12Q6IQ22 244 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 CALHM1Q8IU99 346 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 OR2M7Q8NG81 312 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 OR56B1Q8NGI3 324 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 OR11L1Q8NGX0 322 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GPR137Q96N19 417 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 NARFLQ9H6Q4 476 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 GPR35Q9HC97 309 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 BOKQ9UMX3 212 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 ST3GAL6Q9Y274 331 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 RBM7Q9Y580 266 aaKnown RBP4.87□□□□□ -1.63
LIMA1-215ENST00000552823 COL4A2P08572 1712 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 ARHGAP21Q5T5U3 1957 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 IGKV1-27A0A075B6S5 117 aa4.87□□□□□ -1.63
LIMA1-215ENST00000552823 KANTRA0A1W2PQU2 76 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms