RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 OTULINQ96BN8 352 aa10.46□□□□□ -0.73
PTCH1-221ENST00000550914 NIPSNAP1Q9BPW8 284 aa10.46□□□□□ -0.73
PTCH1-221ENST00000550914 NPFFR1Q9GZQ6 430 aa10.46□□□□□ -0.73
PTCH1-221ENST00000550914 OR51V1Q9H2C8 321 aa10.46□□□□□ -0.73
PTCH1-221ENST00000550914 HEXA-AS1Q9H8Q6 139 aa10.46□□□□□ -0.73
PTCH1-221ENST00000550914 ARL8BQ9NVJ2 186 aa10.46□□□□□ -0.73
PTCH1-221ENST00000550914 NBEAL2Q6ZNJ1 2754 aa10.46□□□□□ -0.74
PTCH1-221ENST00000550914 hCG_1809904A0A1W2PP81 198 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 A0A1W2PPE2 198 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 A0A1W2PR64 198 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 A0A1W2PRV1 198 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 ZNF732B4DXR9 585 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 G3V4G9 280 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 MTRF1O75570 445 aaKnown RBP10.45□□□□□ -0.74
PTCH1-221ENST00000550914 RHBDL1O75783 438 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 DCTN3O75935 186 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 TFF1P04155 84 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 SLC35D3Q5M8T2 416 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 ZBTB37Q5TC79 503 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 DEGS2Q6QHC5 323 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 DHFR2Q86XF0 187 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 FAM185AQ8N0U4 392 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 IQCF1Q8N6M8 205 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 KLHDC1Q8N7A1 406 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 FAM81AQ8TBF8 368 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 GIPC3Q8TF64 312 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 C17orf50Q8WW18 174 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 AQP3Q92482 292 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 CLPTM1LQ96KA5 538 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 FEVQ99581 238 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 CDCA4Q9BXL8 241 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 ARL2BPQ9Y2Y0 163 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 SIGLEC9Q9Y336 463 aa10.45□□□□□ -0.74
PTCH1-221ENST00000550914 COL7A1Q02388 2944 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 VGLL3A8MV65 326 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 SELENOFO60613 162 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 HMGN1P05114 100 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 ALOX5APP20292 161 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 RPL31P62899 125 aaKnown RBP10.44□□□□□ -0.74
PTCH1-221ENST00000550914 TRIM25Q14258 630 aaKnown RBP10.44□□□□□ -0.74
PTCH1-221ENST00000550914 LY6EQ16553 131 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 SMIM21Q3B7S5 101 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 PLBD1Q6P4A8 553 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 ACP7Q6ZNF0 438 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 TRPM8Q7Z2W7 1104 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 THAP5Q7Z6K1 395 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 KRT77Q7Z794 578 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 MKXQ8IYA7 352 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 ZNF561Q8N587 486 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 RORBQ92753 470 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 YY1AP1Q9H869 796 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 ELL3Q9HB65 397 aaPredicted RBP10.44□□□□□ -0.74
PTCH1-221ENST00000550914 C19orf12Q9NSK7 152 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 FOXJ3Q9UPW0 622 aa10.44□□□□□ -0.74
PTCH1-221ENST00000550914 SLC1A7O00341 560 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 XPNPEP2O43895 674 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 NOS1APO75052 506 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-221ENST00000550914 IGLV3-1P01715 115 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 RAP2AP10114 183 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 CAPZA1P52907 286 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 LGALS4P56470 323 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 RIPPLY1Q0D2K3 151 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 CEP78Q5JTW2 689 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 LCN1P1Q5VSP4 162 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 KCTD18Q6PI47 426 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-221ENST00000550914 HAGHLQ6PII5 290 aaPredicted RBP10.43□□□□□ -0.74
PTCH1-221ENST00000550914 Q6ZPA2 131 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 CALHM1Q8IU99 346 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 C11orf42Q8N5U0 333 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 POC1AQ8NBT0 407 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 PIFOQ8TCI5 191 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 YIPF3Q9GZM5 350 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 FAM206AQ9NX38 181 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 USE1Q9NZ43 259 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 LAMP5Q9UJQ1 280 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 KLHDC2Q9Y2U9 406 aa10.43□□□□□ -0.74
PTCH1-221ENST00000550914 TMEM269A0A1B0GVZ9 245 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 FAM90A8PA6NJQ4 464 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 RFPL4AA6NLU0 287 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 RFPL4AL1F8VTS6 287 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 PIN1P1O15428 100 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 CHST1O43916 411 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 ZNF254O75437 659 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 PGA5P0DJD9 388 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 HOXB6P17509 224 aaKnown RBP10.42□□□□□ -0.74
PTCH1-221ENST00000550914 SLC2A5P22732 501 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 ERVFRD-1P60508 538 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 CDK5Q00535 292 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 ROM1Q03395 351 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 EMX1Q04741 257 aaPredicted RBP10.42□□□□□ -0.74
PTCH1-221ENST00000550914 GINS1Q14691 196 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 TMEM200BQ69YZ2 307 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 PIGWQ7Z7B1 504 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 CPOQ8IVL8 374 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 Q8N2B8 174 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 CD177Q8N6Q3 437 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 OR4S1Q8NGB4 309 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 MROQ9BYG7 248 aa10.42□□□□□ -0.74
PTCH1-221ENST00000550914 TENM3Q9P273 2699 aa10.41□□□□□ -0.74
PTCH1-221ENST00000550914 MEGF11A6BM72 1044 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms