RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 ZNF552Q9H707 407 aaPredicted RBP9.62□□□□□ -0.87
CUX1-212ENST00000547394 OPN4Q9UHM6 478 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 NPTNQ9Y639 398 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 ROS1P08922 2347 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 CADP27708 2225 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 ZNF850A8MQ14 1090 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 SULT1C2O00338 296 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 MSTNO14793 375 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 DNPH1O43598 174 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 NME2P1O60361 137 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 IL5P05113 134 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 SFTPBP07988 381 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 AMY2BP19961 511 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 NME2P22392 152 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 RPS27AP62979 156 aaKnown RBP9.62□□□□□ -0.87
CUX1-212ENST00000547394 FAM3AP98173 230 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 SLC10A1Q14973 349 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 PLCXD3Q63HM9 321 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 ZNF100Q8IYN0 542 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 ZNF680Q8NEM1 530 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 OR52H1Q8NGJ2 320 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 HAS2Q92819 552 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 PTX4Q96A99 478 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 FER1L6-AS2Q96M78 137 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 GPR137Q96N19 417 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 LUZP4Q9P127 313 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 PCNX1Q96RV3 2341 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 NBASA2RRP1 2371 aa9.62□□□□□ -0.87
CUX1-212ENST00000547394 DISC1C4P0D8 188 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 F5H5P2 479 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 HSPB6O14558 160 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 LILRA1O75019 489 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 MTRF1O75570 445 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 PRF1P14222 555 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 RIPPLY1Q0D2K3 151 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 GK2Q14410 553 aaPredicted RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 RSU1Q15404 277 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 SLC9A3R2Q15599 337 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 LY6G6FQ5SQ64 297 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 TEX261Q6UWH6 196 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 CALHM1Q8IU99 346 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 MCEMP1Q8IX19 187 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 C12orf45Q8N5I9 185 aaPredicted RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 HS3ST6Q96QI5 342 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 U3KQ87 197 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 SPTA1P02549 2419 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 SNRPGP15A8MWD9 76 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 MFNGO00587 321 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 GEMIN2O14893 280 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 FARS2O95363 451 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 NRASP01111 189 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 GLI4P10075 376 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 HOXD11P31277 338 aaPredicted RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 NPBWR2P48146 333 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 SOX8P57073 446 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 GMFBP60983 142 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 PDSS1Q5T2R2 415 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 CSNK2A3Q8NEV1 391 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 APH1AQ96BI3 265 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 URM1Q9BTM9 101 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 PECRQ9BY49 303 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 PLEKHJ1Q9NW61 149 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 IL36RNQ9UBH0 155 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 EEF1E1-BLOC1S5C9J1V9 151 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 CPN1P15169 458 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 CD46P15529 392 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 DUSP1P28562 367 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 CLN3Q13286 438 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 EXOSC2Q13868 293 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 ZBTB37Q5TC79 503 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 SIGIRRQ6IA17 410 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 PIP4P1Q86T03 277 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 SPICQ8N5J4 248 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 OR56B2PQ8NGI1 322 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 OR56B1Q8NGI3 324 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 PP6455Q8WZ26 134 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 BORCS8Q96FH0 119 aa9.61□□□□□ -0.87
CUX1-212ENST00000547394 PAPOLGQ9BWT3 736 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 TNRC6AQ8NDV7 1962 aaKnown RBP9.61□□□□□ -0.87
CUX1-212ENST00000547394 A0A0A6YYH2 397 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 C13orf42A0A1B0GVH6 325 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 A6NJ64 397 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 F8VVB4 439 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 F8VWA3 439 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 KLRC4-KLRK1H3BQV0 150 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 CRYZL1O95825 349 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 CSTBP04080 98 aaKnown RBP9.6□□□□□ -0.87
CUX1-212ENST00000547394 TPOP07202 933 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 MELTFP08582 738 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 GIPP09681 153 aaPredicted RBP9.6□□□□□ -0.87
CUX1-212ENST00000547394 NAT2P11245 290 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 CD34P28906 385 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 RAB1AP62820 205 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 IL13RA1P78552 427 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 DEFB109BQ30KR1 87 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 SMUG1Q53HV7 270 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 ALKBH2Q6NS38 261 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 MYPOPQ86VE0 399 aaPredicted RBP9.6□□□□□ -0.87
CUX1-212ENST00000547394 FBXL14Q8N1E6 418 aa9.6□□□□□ -0.87
CUX1-212ENST00000547394 CCDC120Q96HB5 630 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms