RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 FBXW5Q969U6 566 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 MRGPRFQ96AM1 343 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 PRDM14Q9GZV8 571 aa12.56□□□□□ -0.4
CLIP1-216ENST00000541410 OR14I1A6ND48 311 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 C3orf80F5H4A9 247 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 XRCC2O43543 280 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 IGHG3P01860 377 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 CSTBP04080 98 aaKnown RBP12.55□□□□□ -0.4
CLIP1-216ENST00000541410 OR8B8Q15620 311 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 MICBQ29980 383 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 PIGYQ3MUY2 71 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 ATPAF1Q5TC12 328 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-216ENST00000541410 COLCA1Q6ZS62 124 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 MDP1Q86V88 176 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 OR4K15Q8NH41 348 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 DYRK2Q92630 601 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 POM121L2Q96KW2 1035 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 MICU1Q9BPX6 476 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 PECRQ9BY49 303 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 GPN1Q9HCN4 374 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-216ENST00000541410 SCP2D1Q9UJQ7 156 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 VSIG4Q9Y279 399 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 LILRA1O75019 489 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 ALX3O95076 343 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 MPGP29372 298 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 SNU13P55769 128 aaKnown RBP12.55□□□□□ -0.4
CLIP1-216ENST00000541410 PLP2Q04941 152 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 TMEM42Q69YG0 159 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 VWA1Q6PCB0 445 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 ZFAND1Q8TCF1 268 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 SPSB1Q96BD6 273 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 RGCCQ9H4X1 137 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 CLCF1Q9UBD9 225 aa12.55□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF816-ZNF321PA0A0X1KG74 233 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 OR2AT4A6NND4 320 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 DHRS7CA6NNS2 312 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 SDCBPO00560 298 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 SCGNO76038 276 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 SFTPBP07988 381 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 IL32P24001 234 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 WNT5AP41221 380 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ALDH3B1P43353 468 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 OR3A2P47893 321 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 FOXF2Q12947 444 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF585AQ6P3V2 769 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 MRPL21Q7Z2W9 205 aaKnown RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 CDH24Q86UP0 819 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 FAM89BQ8N5H3 189 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ASCC1Q8N9N2 400 aaKnown RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 C9orf106Q8NAJ2 232 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF431Q8TF32 576 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 DEDD2Q8WXF8 326 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 BCL2L2Q92843 193 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 CCDC120Q96HB5 630 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 GMPPAQ96IJ6 420 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF701Q9NV72 531 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 KCNN3Q9UGI6 736 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 HEATR1Q9H583 2144 aaKnown RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 DISC1C4P0D8 188 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 TPOP07202 933 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 GSTP1P09211 210 aaKnown RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 PRKACBP22694 351 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 IGHV1-2P23083 117 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ARR3P36575 388 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 SIGIRRQ6IA17 410 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 SEZ6L2Q6UXD5 910 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 ZADH2Q8N4Q0 377 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 SPSB4Q96A44 273 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 HYLS1Q96M11 299 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 FAAP24Q9BTP7 215 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 REPIN1Q9BWE0 567 aaKnown RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 FGF23Q9GZV9 251 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-216ENST00000541410 METTL9Q9H1A3 318 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 PLEKHJ1Q9NW61 149 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 BSNQ9UPA5 3926 aa12.54□□□□□ -0.4
CLIP1-216ENST00000541410 G3V3Q6 166 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 GOSR2O14653 212 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 GEMIN2O14893 280 aaKnown RBP12.53□□□□□ -0.4
CLIP1-216ENST00000541410 IFNA6P05013 189 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 IL5P05113 134 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 OR4E1P0C645 316 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 GSTT2P0CG29 244 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 CPT2P23786 658 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 DNASE1P24855 282 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 SSTR2P30874 369 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 MECP2P51608 486 aaKnown RBP12.53□□□□□ -0.4
CLIP1-216ENST00000541410 GPM6AP51674 278 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 FOXC1Q12948 553 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 DCAF12L2Q5VW00 463 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 TMEM53Q6P2H8 277 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 TFAP2EQ6VUC0 442 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 C9orf62Q8N4C0 152 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 CCDC54Q8NEL0 328 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 STEAP2Q8NFT2 490 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 OR51F2Q8NH61 342 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 PRRX2Q99811 253 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 GHRLQ9UBU3 117 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 SLC7A11Q9UPY5 501 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 ZNF175Q9Y473 711 aa12.53□□□□□ -0.4
CLIP1-216ENST00000541410 CEP295Q9C0D2 2601 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms