RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 C9orf16Q9BUW7 83 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 ABHD6Q9BV23 337 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 MEGF9Q9H1U4 602 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 SP140LQ9H930 580 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 ZNF702PQ9H963 129 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 C19orf12Q9NSK7 152 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 USE1Q9NZ43 259 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 DNAJC27Q9NZQ0 273 aa11.58□□□□□ -0.56
CPSF1-201ENST00000526271 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.57□□□□□ -0.56
CPSF1-201ENST00000526271 M0R1W7 72 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 ATP6V1G2O95670 118 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 ANXA2P07355 339 aaKnown RBP11.57□□□□□ -0.56
CPSF1-201ENST00000526271 ACAA1P09110 424 aaPredicted RBP11.57□□□□□ -0.56
CPSF1-201ENST00000526271 SLC25A1P53007 311 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 ZNRF1Q8ND25 227 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 OR10Z1Q8NGY1 313 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 MMP28Q9H239 520 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 OPA3Q9H6K4 179 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 ZNF556Q9HAH1 456 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 AURKAIP1Q9NWT8 199 aaPredicted RBP11.57□□□□□ -0.56
CPSF1-201ENST00000526271 SLC25A10Q9UBX3 287 aaPredicted RBP11.57□□□□□ -0.56
CPSF1-201ENST00000526271 KLHDC2Q9Y2U9 406 aa11.57□□□□□ -0.56
CPSF1-201ENST00000526271 ANKRD61A6NGH8 418 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 ZNF850A8MQ14 1090 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 PIN1P1O15428 100 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 ALX3O95076 343 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 SOX14O95416 240 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 ALPLP05186 524 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 CD28P10747 220 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 OSMP13725 252 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 EEF1B2P24534 225 aaKnown RBP11.56□□□□□ -0.56
CPSF1-201ENST00000526271 ALDH3A2P51648 485 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 CAV3P56539 151 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 ACSM1Q08AH1 577 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 PRDX4Q13162 271 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 LRRC10Q5BKY1 277 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 OGFRL1Q5TC84 451 aaPredicted RBP11.56□□□□□ -0.56
CPSF1-201ENST00000526271 LPCAT4Q643R3 524 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 RPL13AP3Q6NVV1 102 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 ZBTB49Q6ZSB9 765 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 TIGD4Q8IY51 512 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 MKXQ8IYA7 352 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 CMTM4Q8IZR5 234 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 CBR4Q8N4T8 237 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 EME1Q96AY2 570 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 PAPOLGQ9BWT3 736 aaKnown RBP11.56□□□□□ -0.56
CPSF1-201ENST00000526271 TSSK6Q9BXA6 273 aa11.56□□□□□ -0.56
CPSF1-201ENST00000526271 PAPOLBQ9NRJ5 636 aaKnown RBP11.56□□□□□ -0.56
CPSF1-201ENST00000526271 FAM183AA6NL82 134 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 PRR32B1ATL7 298 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 PSG2P11465 335 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 FMO3P31513 532 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 GRK5P34947 590 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 BMXP51813 675 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 ESRRGP62508 458 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 EIF2B1Q14232 305 aaKnown RBP11.55□□□□□ -0.56
CPSF1-201ENST00000526271 TIGD6Q17RP2 521 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 GFOD2Q3B7J2 385 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 Q6ZTK2 550 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 KRT74Q7RTS7 529 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 LHFPL4Q7Z7J7 247 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 DNTTIP1Q9H147 329 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 METTL8Q9H825 291 aaKnown RBP11.55□□□□□ -0.56
CPSF1-201ENST00000526271 BRD7Q9NPI1 651 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 C8orf4Q9NR00 106 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 KRT84Q9NSB2 600 aa11.55□□□□□ -0.56
CPSF1-201ENST00000526271 CAB39Q9Y376 341 aaPredicted RBP11.55□□□□□ -0.56
CPSF1-201ENST00000526271 BTBD17A6NE02 478 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 OR2AT4A6NND4 320 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 E9PQ18 207 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 EI24O14681 340 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 MITFO75030 526 aaPredicted RBP11.54□□□□□ -0.56
CPSF1-201ENST00000526271 PAHP00439 452 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 CST4P01036 141 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 JUNBP17275 347 aaPredicted RBP11.54□□□□□ -0.56
CPSF1-201ENST00000526271 NDUFB7P17568 137 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 PEX2P28328 305 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 NAA10P41227 235 aaPredicted RBP11.54□□□□□ -0.56
CPSF1-201ENST00000526271 CRISP1P54107 249 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 DLX6P56179 175 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 GRB2P62993 217 aaKnown RBP11.54□□□□□ -0.56
CPSF1-201ENST00000526271 CDK5Q00535 292 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 MZT1Q08AG7 82 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 TAF13Q15543 124 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 LRRC75BQ2VPJ9 315 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 NCR3LG1Q68D85 454 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 Q8N2B8 174 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 IQCF1Q8N6M8 205 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 CD177Q8N6Q3 437 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 PACRGLQ8N7B6 248 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 OR8B12Q8NGG6 310 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 OR6K6Q8NGW6 343 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 MRAPQ8TCY5 172 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 NRG4Q8WWG1 115 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 PHF21AQ96BD5 680 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 OR51I2Q9H344 312 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 NLKQ9UBE8 527 aa11.54□□□□□ -0.56
CPSF1-201ENST00000526271 FAM90A8PA6NJQ4 464 aa11.53□□□□□ -0.56
CPSF1-201ENST00000526271 DLGAP1O14490 977 aa11.53□□□□□ -0.56
CPSF1-201ENST00000526271 ANGPTL7O43827 346 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms