RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 LIMS4P0CW20 117 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 GFAPP14136 432 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 CELP19835 753 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ATP6V1B2P21281 511 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 IL12AP29459 219 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 NTSP30990 170 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 SSTR5P35346 364 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 TAS2R39P59534 338 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ERVPABLB-1P60509 514 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ZNF85Q03923 595 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 EIF4EBP2Q13542 120 aaPredicted RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 LY6DQ14210 128 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 FASTKQ14296 549 aaKnown RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 PSMD5Q16401 504 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 SPIN4Q56A73 249 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 FAM120AOSQ5T036 256 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 HES5Q5TA89 166 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ZNF544Q6NX49 715 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4L9Q6RFH8 374 aaPredicted RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 FAM131AQ6UXB0 335 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 MBOAT2Q6ZWT7 520 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 TMED4Q7Z7H5 227 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 IFNEQ86WN2 208 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 PHF13Q86YI8 300 aaPredicted RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 VKORC1L1Q8N0U8 176 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 EID2Q8N6I1 236 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 C12orf29Q8N999 325 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 WDR31Q8NA23 367 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 OR52N1Q8NH53 320 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 PCNPQ8WW12 178 aaKnown RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 MOCOSQ96EN8 888 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 POM121L2Q96KW2 1035 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 ZNF488Q96MN9 340 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 KCTD7Q96MP8 289 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 MS4A4EQ96PG1 132 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 FOXC2Q99958 501 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 APOL4Q9BPW4 351 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 AGMATQ9BSE5 352 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 TIPINQ9BVW5 301 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 CDCA4Q9BXL8 241 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 TRIM15Q9C019 465 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 NAT10Q9H0A0 1025 aaKnown RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 PCBD2Q9H0N5 130 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 RBKSQ9H477 322 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 SCRT2Q9NQ03 307 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 CTNNBIP1Q9NSA3 81 aaPredicted RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 THUMPD1Q9NXG2 353 aaKnown RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 THAP10Q9P2Z0 257 aaPredicted RBP3.79□□□□□ -1.8
CD44-220ENST00000525688 DUX4Q9UBX2 424 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 RSPH14Q9UHP6 348 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 RAB26Q9ULW5 256 aa3.79□□□□□ -1.8
CD44-220ENST00000525688 PRRC2BQ5JSZ5 2229 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 MYH15Q9Y2K3 1946 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 TTC28Q96AY4 2481 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 A6NIZ1 184 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 GJE1A6NN92 205 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 USP27XA6NNY8 438 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 NEDD8-MDP1E9PL57 170 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 H7C2Y5 167 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 K7EQG2 157 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 DFFAO00273 331 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 KPNA3O00505 521 aaPredicted RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 FCN1O00602 326 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CDIPTO14735 213 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ERI3O43414 337 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 SSNA1O43805 119 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 KLRC4O43908 158 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PRKYO43930 277 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 UGT1A9O60656 530 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 SNAP29O95721 258 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 FGF1P05230 155 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CD5P06127 495 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 NBEAP1P0C6P0 100 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 LIPCP11150 499 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 SLC2A1P11166 492 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 KCNE1P15382 129 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 UGT2B7P16662 529 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CRABP1P29762 137 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 HTR1FP30939 366 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ERFP50548 548 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 P2RY4P51582 365 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PRKXP51817 358 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PEX3P56589 373 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 TAS2R31P59538 309 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 RPS27AP62979 156 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 PAFAH1B2P68402 229 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 RPL19P84098 196 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 FKBP3Q00688 224 aaKnown RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 ACVR1Q04771 509 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 IL18R1Q13478 541 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 ZNF146Q15072 292 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 GUSBP1Q15486 140 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 SPA17Q15506 151 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 TBC1D28Q2M2D7 210 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 CLLU1OSQ5K130 101 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 BRMS1LQ5PSV4 323 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 PVRIGQ6DKI7 326 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 FAM199XQ6PEV8 388 aaPredicted RBP3.78□□□□□ -1.8
CD44-220ENST00000525688 ZNF613Q6PF04 617 aa3.78□□□□□ -1.8
CD44-220ENST00000525688 DHRS4L2Q6PKH6 230 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms