RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 PLCXD3Q63HM9 321 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 NCR3LG1Q68D85 454 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 HAGHLQ6PII5 290 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-211ENST00000491233 DEGS2Q6QHC5 323 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 THAP5Q7Z6K1 395 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 ZSCAN4Q8NAM6 433 aaPredicted RBP11.17□□□□□ -0.62
COL6A3-211ENST00000491233 DUS3LQ96G46 650 aaKnown RBP11.17□□□□□ -0.62
COL6A3-211ENST00000491233 OR8B4Q96RC9 309 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 MROQ9BYG7 248 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 PBOV1Q9GZY1 135 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 GPR84Q9NQS5 396 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 PAPOLBQ9NRJ5 636 aaKnown RBP11.17□□□□□ -0.62
COL6A3-211ENST00000491233 ZNF222Q9UK12 451 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 IKZF2Q9UKS7 526 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 MAB21L2Q9Y586 359 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 CMYA5Q8N3K9 4069 aa11.17□□□□□ -0.62
COL6A3-211ENST00000491233 TCRBV3S1A0A5B6 114 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 MEIOCA2RUB1 952 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 GYG2O15488 501 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 IGLV3-1P01715 115 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 ATP6V1B1P15313 513 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 CRISP1P54107 249 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 ROM1Q03395 351 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 RIPPLY1Q0D2K3 151 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 OCLNQ16625 522 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 CEACAM21Q3KPI0 293 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 MOB3CQ70IA8 216 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 KRT74Q7RTS7 529 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 ZNF679Q8IYX0 411 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 FAM185AQ8N0U4 392 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 ZNRF1Q8ND25 227 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 ZNF671Q8TAW3 534 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 OR51E1Q8TCB6 317 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 DNAJC9Q8WXX5 260 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 AQP3Q92482 292 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 CNN2Q99439 309 aaKnown RBP11.16□□□□□ -0.62
COL6A3-211ENST00000491233 TEAD3Q99594 435 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 MMP27Q9H306 513 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 METTL8Q9H825 291 aaKnown RBP11.16□□□□□ -0.62
COL6A3-211ENST00000491233 NUFIP1Q9UHK0 495 aaKnown RBP11.16□□□□□ -0.62
COL6A3-211ENST00000491233 POMPQ9Y244 141 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 PIGLQ9Y2B2 252 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 TMEM14AQ9Y6G1 99 aa11.16□□□□□ -0.62
COL6A3-211ENST00000491233 TRBV23-1A0A0A0MS06 115 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 M0R129 80 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 GSC2O15499 205 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 PRKYO43930 277 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ZNF254O75437 659 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 TTRP02766 147 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 UBE2E1P51965 193 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 RIDAP52758 137 aaKnown RBP11.15□□□□□ -0.62
COL6A3-211ENST00000491233 CAPZA1P52907 286 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ACSM1Q08AH1 577 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 BLMHQ13867 455 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ZBTB37Q5TC79 503 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ASPHD2Q6ICH7 369 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 HCP5Q6MZN7 132 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 FAHD1Q6P587 224 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 C1orf122Q6ZSJ8 110 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 OR5A2Q8NGI9 324 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 OR5R1Q8NH85 324 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ASB17Q8WXJ9 295 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 UBE2FQ969M7 185 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ITFG2Q969R8 447 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 PPP1R14AQ96A00 147 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ZNF488Q96MN9 340 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 RBM4BQ9BQ04 359 aaKnown RBP11.15□□□□□ -0.62
COL6A3-211ENST00000491233 C16orf95Q9H693 158 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 TCF7L1Q9HCS4 588 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 ENPP5Q9UJA9 477 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 GTF2A1LQ9UNN4 478 aa11.15□□□□□ -0.62
COL6A3-211ENST00000491233 WNK1Q9H4A3 2382 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 TET2Q6N021 2002 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-211ENST00000491233 LOC110117498-PIK3R3F6TDL0 507 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 H0YAE9 185 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 ANGPTL7O43827 346 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 DHRS3O75911 302 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 TSPAN15O95858 294 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 DAPP51397 102 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 PTGES3Q15185 160 aaKnown RBP11.14□□□□□ -0.63
COL6A3-211ENST00000491233 SMIM21Q3B7S5 101 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 ACP7Q6ZNF0 438 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 BCDIN3DQ7Z5W3 292 aaKnown RBP11.14□□□□□ -0.63
COL6A3-211ENST00000491233 POC1AQ8NBT0 407 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 C17orf50Q8WW18 174 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 SLC7A6OSQ96CW6 309 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-211ENST00000491233 NRBF2Q96F24 287 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 SDSLQ96GA7 329 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 PRRG3Q9BZD7 231 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 MOB1AQ9H8S9 216 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 GPR173Q9NS66 373 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 C19orf12Q9NSK7 152 aa11.14□□□□□ -0.63
COL6A3-211ENST00000491233 ANKRD61A6NGH8 418 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 SLC22A31A6NKX4 558 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 H3BUX3 64 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 J3QT63 122 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 MAGEB4O15481 346 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-211ENST00000491233 SYNGR1O43759 233 aa11.13□□□□□ -0.63
COL6A3-211ENST00000491233 SRSF10O75494 262 aaKnown RBP11.13□□□□□ -0.63
COL6A3-211ENST00000491233 MTRF1O75570 445 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms