RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ANXA8L1Q5VT79 327 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 STEAP4Q687X5 459 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 CLEC2AQ6UVW9 174 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 SLC30A8Q8IWU4 369 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 KATNAL2Q8IYT4 538 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 C9orf72Q96LT7 481 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 OPALINQ96PE5 141 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 REEP1Q9H902 201 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 PXMP2Q9NR77 195 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 HEBP1Q9NRV9 189 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 TREX1Q9NSU2 369 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 SIGLEC1Q9BZZ2 1709 aa1.46□□□□□ -2.18
PTPN4-212ENST00000488896 VWA8A3KMH1 1905 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 A0A1W2PRD5 423 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 LINC01619G3V211 115 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 GOLGA8TH3BQL2 631 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 XRCC2O43543 280 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 CSRP1P21291 193 aaKnown RBP1.45□□□□□ -2.18
PTPN4-212ENST00000488896 IL3RAP26951 378 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 CD82P27701 267 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 GBE1Q04446 702 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 KDSRQ06136 332 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 INCA1Q0VD86 236 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 FA2HQ7L5A8 372 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 PDPNQ86YL7 162 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 MICU2Q8IYU8 434 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 KIF2BQ8N4N8 673 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 ITFG1Q8TB96 612 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 RDH12Q96NR8 316 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 ALS2CR12Q96Q35 445 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 NAA50Q9GZZ1 169 aaKnown RBP1.45□□□□□ -2.18
PTPN4-212ENST00000488896 SND1-IT1Q9HBX3 110 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 CD209Q9NNX6 404 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 PRSS16Q9NQE7 514 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 TMEM100Q9NV29 134 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 OR51B2Q9Y5P1 312 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 SSH2Q76I76 1423 aa1.45□□□□□ -2.18
PTPN4-212ENST00000488896 IGHV6-1A0A0B4J1U7 121 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 A0A0B4J2E0 115 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 SUPT3HB4E1H0 165 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 OR5AC1P0C628 307 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 GPR1P46091 355 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 DEFB103AP81534 67 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 IL18Q14116 193 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 HADHQ16836 314 aaKnown RBP1.44□□□□□ -2.18
PTPN4-212ENST00000488896 C5orf64Q2M2E5 130 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 KLHL40Q2TBA0 621 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 LRRC8AQ8IWT6 810 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 TRAM1L1Q8N609 369 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 COMMD1Q8N668 190 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 INO80EQ8NBZ0 244 aaPredicted RBP1.44□□□□□ -2.18
PTPN4-212ENST00000488896 OR8K3Q8NH51 312 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 SFXN5Q8TD22 340 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 YIPF6Q96EC8 236 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 TMEM175Q9BSA9 504 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 MTG1Q9BT17 334 aaPredicted RBP1.44□□□□□ -2.18
PTPN4-212ENST00000488896 DEFB129Q9H1M3 183 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 VPS37BQ9H9H4 285 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 MRPL22Q9NWU5 206 aaKnown RBP1.44□□□□□ -2.18
PTPN4-212ENST00000488896 CES1P1Q9UKY3 287 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 NDRG2Q9UN36 371 aaKnown RBP1.44□□□□□ -2.18
PTPN4-212ENST00000488896 PPIL1Q9Y3C6 166 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 ZNF608Q9ULD9 1512 aaPredicted RBP1.44□□□□□ -2.18
PTPN4-212ENST00000488896 NUP205Q92621 2012 aa1.44□□□□□ -2.18
PTPN4-212ENST00000488896 SETD1AO15047 1707 aaKnown RBP1.43□□□□□ -2.18
PTPN4-212ENST00000488896 CASQ2O14958 399 aaPredicted RBP1.43□□□□□ -2.18
PTPN4-212ENST00000488896 PRSS3P35030 304 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 CLDN18P56856 261 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 DNAJC3Q13217 504 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 TSC22D1Q15714 1073 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 HHATQ5VTY9 493 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 FAM104BQ5XKR9 115 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 NDUFAF7Q7L592 441 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 CMTM8Q8IZV2 173 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 EIF4E3Q8N5X7 224 aaKnown RBP1.43□□□□□ -2.18
PTPN4-212ENST00000488896 RCN3Q96D15 328 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 ZNF75AQ96N20 296 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 TMEM106BQ9NUM4 274 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 VAX2Q9UIW0 290 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 TENM1Q9UKZ4 2725 aa1.43□□□□□ -2.18
PTPN4-212ENST00000488896 TMEM72A0PK05 275 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 SLC22A20A6NK97 555 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 ZNF99A8MXY4 864 aaPredicted RBP1.42□□□□□ -2.18
PTPN4-212ENST00000488896 FARS2O95363 451 aaKnown RBP1.42□□□□□ -2.18
PTPN4-212ENST00000488896 PTHP01270 115 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 GFAPP14136 432 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 TUBG1P23258 451 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 FOXA1P55317 472 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 GRB2P62993 217 aaKnown RBP1.42□□□□□ -2.18
PTPN4-212ENST00000488896 PAFAH1B2P68402 229 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 C2orf54Q08AI8 447 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 PCOTHQ58A44 107 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 ZCCHC24Q8N2G6 241 aaKnown RBP1.42□□□□□ -2.18
PTPN4-212ENST00000488896 WDR31Q8NA23 367 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 YIPF5Q969M3 257 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 ISOC2Q96AB3 205 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 SMARCD1Q96GM5 515 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 SNF8Q96H20 258 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 ARV1Q9H2C2 271 aa1.42□□□□□ -2.18
PTPN4-212ENST00000488896 OR51B5Q9H339 312 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms