RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 POU3F1Q03052 451 aaPredicted RBP11.71□□□□□ -0.54
USP40-214ENST00000483519 ARL6IP1Q15041 203 aa11.71□□□□□ -0.54
USP40-214ENST00000483519 LCN10Q6JVE6 187 aa11.71□□□□□ -0.54
USP40-214ENST00000483519 WDR77Q9BQA1 342 aaPredicted RBP11.71□□□□□ -0.54
USP40-214ENST00000483519 TCEAL2Q9H3H9 227 aaPredicted RBP11.71□□□□□ -0.54
USP40-214ENST00000483519 C8orf33Q9H7E9 229 aaPredicted RBP11.71□□□□□ -0.54
USP40-214ENST00000483519 GAR1Q9NY12 217 aaKnown RBP11.71□□□□□ -0.54
USP40-214ENST00000483519 A0A1B0GW64 132 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 SERPINE3A8MV23 424 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 ZNF878C9JN71 531 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 CTSDP07339 412 aaPredicted RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 HSF1Q00613 529 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 SOHLH1Q5JUK2 328 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 RTL6Q6ICC9 239 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 H1FNTQ75WM6 255 aaPredicted RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 FAM89BQ8N5H3 189 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 SUMF2Q8NBJ7 301 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 ZNF721Q8TF20 911 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 SLC25A43Q8WUT9 341 aaPredicted RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 MAFIPQ8WZ33 124 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 YPEL4Q96NS1 127 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 GNRHR2Q96P88 292 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 CHST5Q9GZS9 411 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 SZT2Q5T011 3432 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 GPR137BO60478 399 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 YIF1AO95070 293 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 DDAH2O95865 285 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 CELA2BP08218 269 aaPredicted RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 OR13C7P0DN81 318 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 PYY3Q5JQD4 70 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 GPR157Q5UAW9 335 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 OR10S1Q8NGN2 331 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 TMEM234Q8WY98 164 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 DAZLQ92904 295 aaKnown RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 TGM7Q96PF1 710 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 SPSB2Q99619 263 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 UNKLQ9H9P5 680 aaKnown RBP11.7□□□□□ -0.54
USP40-214ENST00000483519 LANCL2Q9NS86 450 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 MED29Q9NX70 200 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 POLR1DQ9Y2S0 133 aa11.7□□□□□ -0.54
USP40-214ENST00000483519 CRYM-AS1A6NIL9 109 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 C10orf142B7Z368 130 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 GIMD1P0DJR0 217 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 GPX4P36969 197 aaPredicted RBP11.69□□□□□ -0.54
USP40-214ENST00000483519 ACY1Q03154 408 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 C14orf28Q4W4Y0 310 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 SEMA6DQ8NFY4 1073 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 AKR7LQ8NHP1 331 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 MRPL24Q96A35 216 aaKnown RBP11.69□□□□□ -0.54
USP40-214ENST00000483519 PARPBPQ9NWS1 579 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 WNT16Q9UBV4 365 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 PUS1Q9Y606 427 aaKnown RBP eCLIP11.69□□□□□ -0.54
USP40-214ENST00000483519 CDH23Q9H251 3354 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 HPNP05981 417 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 ITGA3P26006 1051 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 BLVRBP30043 206 aaPredicted RBP11.69□□□□□ -0.54
USP40-214ENST00000483519 FHITP49789 147 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 TLE3Q04726 772 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 LRRC18Q8N456 261 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 MFSD8Q8NHS3 518 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 SHDQ96IW2 340 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 FAM71F1Q96KD3 344 aaPredicted RBP11.69□□□□□ -0.54
USP40-214ENST00000483519 C5orf34Q96MH7 638 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 ZNF2Q9BSG1 426 aaPredicted RBP11.69□□□□□ -0.54
USP40-214ENST00000483519 PECRQ9BY49 303 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 GPR84Q9NQS5 396 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 ZNF701Q9NV72 531 aaPredicted RBP11.69□□□□□ -0.54
USP40-214ENST00000483519 GFOD1Q9NXC2 390 aa11.69□□□□□ -0.54
USP40-214ENST00000483519 STMND1H3BQB6 276 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 MASP2O00187 686 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 KLF8O95600 359 aaPredicted RBP11.68□□□□□ -0.54
USP40-214ENST00000483519 LMO1P25800 156 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 C9orf40Q8IXQ3 194 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 TMEM156Q8N614 296 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 OR13H1Q8NG92 308 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 OR8B12Q8NGG6 310 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 OR2AJ1Q8NGZ0 328 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 TSLPQ969D9 159 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 CHST11Q9NPF2 352 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 UFSP2Q9NUQ7 469 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 KCNIP3Q9Y2W7 256 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 RRP8O43159 456 aaKnown RBP11.68□□□□□ -0.54
USP40-214ENST00000483519 CA11O75493 328 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 MBPP02686 304 aaPredicted RBP11.68□□□□□ -0.54
USP40-214ENST00000483519 KLK3P07288 261 aaPredicted RBP11.68□□□□□ -0.54
USP40-214ENST00000483519 HOXC12P31275 282 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 NDUFA6P56556 154 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 SSPNQ14714 243 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 DOK3Q7L591 496 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 WDFY1Q8IWB7 410 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 ZNF383Q8NA42 475 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 SLAMF9Q96A28 289 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 MUCL1Q96DR8 90 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 BCO1Q9HAY6 547 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 PISDQ9UG56 409 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 PADI1Q9ULC6 663 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 TMED3Q9Y3Q3 217 aa11.68□□□□□ -0.54
USP40-214ENST00000483519 FOXI3A8MTJ6 420 aaPredicted RBP11.67□□□□□ -0.54
USP40-214ENST00000483519 CTSEP14091 401 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms