RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 SLC25A21Q9BQT8 299 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 ACBD6Q9BR61 282 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 DPH7Q9BTV6 452 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 POTEKPQ9BYX7 375 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 TM6SF2Q9BZW4 377 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 C20orf85Q9H1P6 137 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 METTL17Q9H7H0 456 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 CSNK1G1Q9HCP0 422 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 NT5MQ9NPB1 228 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 SLC25A37Q9NYZ2 338 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 TREM2Q9NZC2 230 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 COX16Q9P0S2 106 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 ZNF629Q9UEG4 869 aaPredicted RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 ENTPD4Q9Y227 616 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CA5BQ9Y2D0 317 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 CARHSP1Q9Y2V2 147 aaKnown RBP4.29□□□□□ -1.72
USP40-213ENST00000483216 WIF1Q9Y5W5 379 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 SCN1AP35498 2009 aa4.29□□□□□ -1.72
USP40-213ENST00000483216 DSPPQ9NZW4 1301 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 GGT3PA6NGU5 568 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RFPL4AA6NLU0 287 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RFPL4AL1F8VTS6 287 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 TAAR5O14804 337 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SCAMP2O15127 329 aaKnown RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 HPGDSO60760 199 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SCGNO76038 276 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 GOSR1O95249 250 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 IFNGP01579 166 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MPC1LP0DKB6 136 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SMIM10L2AP0DMW4 78 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SMIM10L2BP0DMW5 78 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 CALCBP10092 127 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SFTPCP11686 197 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SLC25A4P12235 298 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 TPT1P13693 172 aaKnown RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 PRG2P13727 222 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 PVRP15151 417 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 AREGP15514 252 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 UQCRC2P22695 453 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 NSG1P42857 185 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ARHGDIBP52566 201 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ARPP19P56211 112 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RGS8P57771 180 aaPredicted RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 STARD6P59095 220 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ACTBP60709 375 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ACTG1P63261 375 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 CXCL6P80162 114 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MXD1Q05195 221 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 HTR4Q13639 388 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 TRAM2Q15035 370 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RHEBQ15382 184 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MS4A13Q5J8X5 152 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MARCH8Q5T0T0 291 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ATRAIDQ6UW56 229 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 C2orf66Q6UXQ4 117 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MRPL52Q86TS9 123 aaKnown RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 ACBD7Q8N6N7 88 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 FAM86B1Q8N7N1 296 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 TERB2Q8NHR7 220 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 COQ8AQ8NI60 647 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 CD200R1Q8TD46 325 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 TNFAIP8L1Q8WVP5 186 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 C9orf85Q96MD7 179 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 LINC00052Q96N35 136 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RBM14Q96PK6 669 aaKnown RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 SCGB3A2Q96PL1 93 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 KCNA7Q96RP8 456 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 HBEGFQ99075 208 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 REG4Q9BYZ8 158 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ULBP1Q9BZM6 244 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MFFQ9GZY8 342 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RNF122Q9H9V4 155 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 NOX3Q9HBY0 568 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 MYOZ1Q9NP98 299 aaPredicted RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 NIT2Q9NQR4 276 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 C19orf12Q9NSK7 152 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 CENPMQ9NSP4 180 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 ACER3Q9NUN7 267 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 RASL12Q9NYN1 266 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 SLC2A6Q9UGQ3 507 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 PRG3Q9Y2Y8 225 aaPredicted RBP4.28□□□□□ -1.72
USP40-213ENST00000483216 KPTNQ9Y664 436 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 THSD7BQ9C0I4 1608 aa4.28□□□□□ -1.72
USP40-213ENST00000483216 TANC1Q9C0D5 1861 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 TRAV6A0A075B6T7 132 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 A0A0A6YYH2 397 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 TRAV19A0A0A6YYK7 116 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 PIGBOS1A0A0B4J2F0 54 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 IGHV3-35A0A0C4DH35 117 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 CIB4A0PJX0 185 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 MBLAC1A4D2B0 266 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 NCF1BA6NI72 391 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 A6NJ64 397 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 EFCAB7A8K855 629 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 NCF1CA8MVU1 366 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 A8MX80 341 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 H0YIV9 168 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 M0QZK8 103 aa4.27□□□□□ -1.73
USP40-213ENST00000483216 DNASE2O00115 360 aaPredicted RBP4.27□□□□□ -1.73
USP40-213ENST00000483216 FOXE1O00358 373 aaPredicted RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms