RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SLC22A8Q8TCC7 542 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SFXN5Q8TD22 340 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 GNPDA2Q8TDQ7 276 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 TCTEX1D2Q8WW35 142 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RASSF5Q8WWW0 418 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 MS4A6EQ96DS6 147 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CEP19Q96LK0 163 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 Q96MT0 163 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR2M4Q96R27 311 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OR5M11Q96RB7 305 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 OPRPNQ99935 248 aaPredicted RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 KCNS3Q9BQ31 491 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 WFDC6Q9BQY6 131 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 TM2D1Q9BX74 207 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 TSSK6Q9BXA6 273 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 RSPO3Q9BXY4 272 aaPredicted RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 MROQ9BYG7 248 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLC17A9Q9BYT1 436 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 C6orf62Q9GZU0 229 aaPredicted RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 AICDAQ9GZX7 198 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLITRK2Q9H156 845 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 POLR2J3Q9H1A7 115 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 RNF167Q9H6Y7 350 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 EXO5Q9H790 373 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 HEXA-AS1Q9H8Q6 139 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ANKHQ9HCJ1 492 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 FBXO8Q9NRD0 319 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CTPS2Q9NRF8 586 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ABCB10Q9NRK6 738 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 PNO1Q9NRX1 252 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 TVP23BQ9NYZ1 205 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 CTSZQ9UBR2 303 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 APOBEC3BQ9UH17 382 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 ZNF229Q9UJW7 825 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 SLC17A4Q9Y2C5 497 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ASB4Q9Y574 426 aa3.25□□□□□ -1.89
VPS29-202ENST00000447578 ZFC3H1O60293 1989 aaKnown RBP3.25□□□□□ -1.89
VPS29-202ENST00000447578 DSPPQ9NZW4 1301 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 EFCAB7A8K855 629 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 C4orf51C9J302 202 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 K7EQS6 105 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 WRBO00258 174 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CCRL2O00421 344 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 MYL12BO14950 172 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CASC3O15234 703 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 EMC8O43402 210 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 PRKYO43930 277 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 RAMP3O60896 148 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 DNAJB6O75190 326 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 GPX5O75715 221 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 UPK1BO75841 260 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 EPPINO95925 133 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 LGI1O95970 557 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 HMGN2P05204 90 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 CD55P08174 381 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 PIPP12273 146 aaPredicted RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 PTBP1P26599 531 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS29-202ENST00000447578 AK4P27144 223 aaPredicted RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 S100A5P33763 92 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 IFNGR2P38484 337 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 EIF2B2P49770 351 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 STXBP1P61764 594 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 SNRPGP62308 76 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 FUT5Q11128 374 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 IL18Q14116 193 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 GINS1Q14691 196 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 LTB4RQ15722 352 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 SSX1Q16384 188 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 TIMM50Q3ZCQ8 353 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 SPANXN2Q5MJ10 180 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 TPRG1LQ5T0D9 272 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 LIPNQ5VXI9 398 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 SLC48A1Q6P1K1 146 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 PAQR6Q6TCH4 344 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CLEC2AQ6UVW9 174 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 PLEKHG7Q6ZR37 379 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 VRK2Q86Y07 508 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 ABHD12Q8N2K0 398 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 GPR137CQ8N3F9 429 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 FGFRL1Q8N441 504 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR4K5Q8NGD3 323 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR6C4Q8NGE1 309 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR6T1Q8NGN1 323 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR9Q1Q8NGQ5 310 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR1L6Q8NGR2 347 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR9A2Q8NGT5 310 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 TEX47Q8TBZ9 253 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 LCN9Q8WX39 176 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 ELSPBP1Q96BH3 223 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 PRRC1Q96M27 445 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 LINC00479Q96M42 142 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OPALINQ96PE5 141 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OR7D2Q96RA2 312 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CLCC1Q96S66 551 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 MGLLQ99685 303 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 ARHGDIGQ99819 225 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 MCRIP2Q9BUT9 160 aaKnown RBP3.24□□□□□ -1.89
VPS29-202ENST00000447578 LRRC61Q9BV99 259 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 CDCA4Q9BXL8 241 aa3.24□□□□□ -1.89
VPS29-202ENST00000447578 OPN3Q9H1Y3 402 aaPredicted RBP3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms