RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 OR8U9P0C7N5 309 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 FHITP49789 147 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 CEBPGP53567 150 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 MTCP1P56278 107 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 PEA15Q15121 130 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 GUSBP11Q6P575 273 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF574Q6ZN55 896 aaPredicted RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 OR14K1Q8NGZ2 314 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 OR8U1Q8NH10 309 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 ISOC2Q96AB3 205 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 ESRP2Q9H6T0 727 aaKnown RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 ZMAT5Q9UDW3 170 aaKnown RBP10.65□□□□□ -0.7
CLIP3-201ENST00000360535 FBXL17Q9UF56 701 aa10.65□□□□□ -0.7
CLIP3-201ENST00000360535 M0R036 132 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 IFNA2P01563 188 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 SPINK2P20155 84 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 VAX1Q5SQQ9 334 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 Q7L0L9 218 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 CPEB2Q7Z5Q1 589 aaKnown RBP10.65□□□□□ -0.71
CLIP3-201ENST00000360535 OR5L2Q8NGL0 311 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 C14orf79Q96F83 325 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 BSCL2Q96G97 398 aaPredicted RBP10.65□□□□□ -0.71
CLIP3-201ENST00000360535 OXGR1Q96P68 337 aa10.65□□□□□ -0.71
CLIP3-201ENST00000360535 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.65□□□□□ -0.71
CLIP3-201ENST00000360535 PRRC2CQ9Y520 2896 aaKnown RBP10.65□□□□□ -0.71
CLIP3-201ENST00000360535 PRH1P02810 166 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 GLAP06280 429 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 NOVA1P51513 510 aaKnown RBP10.64□□□□□ -0.71
CLIP3-201ENST00000360535 B2MP61769 119 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 SLC25A47Q6Q0C1 308 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 SGPP2Q8IWX5 399 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 SLC5A7Q9GZV3 580 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 EIF5A2Q9GZV4 153 aaKnown RBP10.64□□□□□ -0.71
CLIP3-201ENST00000360535 ZFP57Q9NU63 452 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 AMDHD2Q9Y303 409 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 MEMO1Q9Y316 297 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 PCDHGA1Q9Y5H4 931 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 NPIPA2E9PIF3 369 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 NPIPA3F8WFD2 350 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 BCAT2O15382 392 aaPredicted RBP10.64□□□□□ -0.71
CLIP3-201ENST00000360535 TMEM33P57088 247 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 TAS2R46P59540 309 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 DCDP81605 110 aaKnown RBP10.64□□□□□ -0.71
CLIP3-201ENST00000360535 ABCA11PQ4W5N1 156 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 KRBOX4Q5JUW0 171 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 RHBDD2Q6NTF9 364 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 OR5L1Q8NGL2 311 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 RASL10BQ96S79 203 aa10.64□□□□□ -0.71
CLIP3-201ENST00000360535 PNRC2Q9NPJ4 139 aaKnown RBP10.64□□□□□ -0.71
CLIP3-201ENST00000360535 NDUFA2O43678 99 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 IFNA21P01568 189 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 PET100P0DJ07 73 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 HKR1P10072 659 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF708P17019 499 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ADH6P28332 368 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 SNAI3Q3KNW1 292 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ACTBL2Q562R1 376 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 HSD17B11Q8NBQ5 300 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 POC1AQ8NBT0 407 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 OCSTAMPQ9BR26 566 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 RAB33BQ9H082 229 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 IFT22Q9H7X7 185 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 RARRES3Q9UL19 164 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 OSGIN2Q9Y236 505 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 KNTC1P50748 2209 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 CPT2P23786 658 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 MPZP25189 248 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 F2RL1P55085 397 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 PIGPP57054 158 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 SNRPEP62304 92 aaKnown RBP10.63□□□□□ -0.71
CLIP3-201ENST00000360535 RSU1Q15404 277 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 AVPI1Q5T686 147 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 GGNBP1Q5YKI7 109 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF529Q6P280 563 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 MEX3BQ6ZN04 569 aaKnown RBP10.63□□□□□ -0.71
CLIP3-201ENST00000360535 WDSUB1Q8N9V3 476 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 OR2M3Q8NG83 312 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ERGIC1Q969X5 290 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 PIGQQ9BRB3 760 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 C1orf123Q9NWV4 160 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 PMS2P1A4D2B8 440 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 M0R135 149 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 NXPH3O95157 252 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 F10P00742 488 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 OR5H8P0DN80 308 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 PTGDSP41222 190 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 SUMF1Q8NBK3 374 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 OR6X1Q8NH79 312 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 EMG1Q92979 244 aaKnown RBP10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF799Q96GE5 643 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 CLCC1Q96S66 551 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 GPHA2Q96T91 129 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 ZNF576Q9H609 170 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 MOB1AQ9H8S9 216 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 TMEM100Q9NV29 134 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 RCC2Q9P258 522 aaKnown RBP10.63□□□□□ -0.71
CLIP3-201ENST00000360535 PADI1Q9ULC6 663 aa10.63□□□□□ -0.71
CLIP3-201ENST00000360535 TSPAN15O95858 294 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 LCATP04180 440 aa10.62□□□□□ -0.71
CLIP3-201ENST00000360535 MSR1P21757 451 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms