RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 RABEPKQ7Z6M1 372 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 OR2I1PQ8NGU4 316 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 OR52N5Q8NH56 324 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 CLDND2Q8NHS1 167 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 HAS2Q92819 552 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 LPAR5Q9H1C0 372 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.35■□□□□ 0.21
SMPD1-201ENST00000342245 INSL5Q9Y5Q6 135 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 CDC14CA4D256 554 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 GPR75O95800 540 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 CD82P27701 267 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 BRS3P32247 399 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 FOXF1Q12946 379 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 MLF2Q15773 248 aaPredicted RBP16.35■□□□□ 0.21
SMPD1-201ENST00000342245 RIPPLY2Q5TAB7 128 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 ERN2Q76MJ5 926 aaKnown RBP16.35■□□□□ 0.21
SMPD1-201ENST00000342245 SULF2Q8IWU5 870 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 TCEAL8Q8IYN2 117 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 ADPRHL1Q8NDY3 354 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 OR14L1PQ8NHC6 308 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 KCNG3Q8TAE7 436 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 ZCCHC10Q8TBK6 192 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 CYB5D2Q8WUJ1 264 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 THOC3Q96J01 351 aaKnown RBP16.35■□□□□ 0.21
SMPD1-201ENST00000342245 DIRC2Q96SL1 478 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 FAAP24Q9BTP7 215 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 FKBP11Q9NYL4 201 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 EHFQ9NZC4 300 aa16.35■□□□□ 0.21
SMPD1-201ENST00000342245 TET1Q8NFU7 2136 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 CRYM-AS1A6NIL9 109 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 KNG1P01042 644 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 SMIM10L1P0DMW3 83 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 RPL29P47914 159 aaKnown RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 RPL23AP62750 156 aaKnown RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 RANP62826 216 aaKnown RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 MGAT2Q10469 447 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 RUNX2Q13950 521 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 ACOT6Q3I5F7 207 aaPredicted RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 FAM78AQ5JUQ0 283 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 SVIPQ8NHG7 77 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 CTHRC1Q96CG8 243 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 SMIM10Q96HG1 83 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 YLPM1P49750 1951 aaKnown RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 ZNF860A6NHJ4 632 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 GPR89AB7ZAQ6 455 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 SIAH2O43255 324 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 IL6RP08887 468 aaPredicted RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 GPR89BP0CG08 455 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 CSNK2A1P68400 391 aaPredicted RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 PRDX4Q13162 271 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 TMEM241Q24JQ0 296 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 PTCRAQ6ISU1 281 aaPredicted RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 POMZP3Q6PJE2 187 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 COX15Q7KZN9 410 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 CSNK2A3Q8NEV1 391 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 MRPL24Q96A35 216 aaKnown RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 GNPNAT1Q96EK6 184 aaPredicted RBP16.34■□□□□ 0.21
SMPD1-201ENST00000342245 ABHD6Q9BV23 337 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 ZFP30Q9Y2G7 519 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 EMC9Q9Y3B6 208 aa16.34■□□□□ 0.21
SMPD1-201ENST00000342245 COL4A2P08572 1712 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 SERINC4A6NH21 518 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 SFTPDP35247 375 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 TRA2AQ13595 282 aaKnown RBP eCLIP16.33■□□□□ 0.2
SMPD1-201ENST00000342245 ARFRP1Q13795 201 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 TMEM52BQ4KMG9 183 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 TMEM215Q68D42 235 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 LHX8Q68G74 356 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 ZNF705AQ6ZN79 300 aaPredicted RBP16.33■□□□□ 0.2
SMPD1-201ENST00000342245 VN1R4Q7Z5H5 301 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 TMEM170AQ8WVE7 144 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 S1PR5Q9H228 398 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 G6PC2Q9NQR9 355 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 ETV2O00321 342 aaPredicted RBP16.33■□□□□ 0.2
SMPD1-201ENST00000342245 ST8SIA3O43173 380 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 ZNF43P17038 809 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 CEBPBP17676 345 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 FOXK1P85037 733 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 PMS2P11Q13670 270 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 ATG4DQ86TL0 474 aaPredicted RBP16.33■□□□□ 0.2
SMPD1-201ENST00000342245 OR5D14Q8NGL3 314 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 TBL1XR1Q9BZK7 514 aa16.33■□□□□ 0.2
SMPD1-201ENST00000342245 POLR3KQ9Y2Y1 108 aaPredicted RBP16.33■□□□□ 0.2
SMPD1-201ENST00000342245 FANCMQ8IYD8 2048 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 SCGB1D1O95968 90 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 PPM1AP35813 382 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 FAM3BP58499 235 aaPredicted RBP16.32■□□□□ 0.2
SMPD1-201ENST00000342245 ID2Q02363 134 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 PLAC9Q5JTB6 97 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 DEGS2Q6QHC5 323 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 CRIPAKQ8N1N5 446 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 CPEB3Q8NE35 698 aaKnown RBP16.32■□□□□ 0.2
SMPD1-201ENST00000342245 WFIKKN1Q96NZ8 548 aa16.32■□□□□ 0.2
SMPD1-201ENST00000342245 LOC102723971A0A1B0GUV8 181 aa16.31■□□□□ 0.2
SMPD1-201ENST00000342245 TCRBV21S2A2A0A5A6 115 aa16.31■□□□□ 0.2
SMPD1-201ENST00000342245 TCF21O43680 179 aa16.31■□□□□ 0.2
SMPD1-201ENST00000342245 ATP6V0CP27449 155 aa16.31■□□□□ 0.2
SMPD1-201ENST00000342245 DUSP1P28562 367 aa16.31■□□□□ 0.2
SMPD1-201ENST00000342245 FAM53BQ14153 422 aa16.31■□□□□ 0.2
SMPD1-201ENST00000342245 GNMTQ14749 295 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms